Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 6.4e-55 217.2 114 100.0
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 9.5e-51 203.4 114 94.7
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 4.0e-33 144.8 111 76.6
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 5.8e-32 141.0 106 74.5
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 6.0e-29 131.0 127 66.1
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 5.3e-17 91.3 61 78.7
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 5.8e-16 87.8 62 77.4
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-15 86.3 60 78.3
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 8.4e-15 84.0 63 74.6
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 3.5e-13 78.6 58 70.7
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 4.6e-13 78.2 101 53.5
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 6.0e-13 77.8 108 50.9
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 7.9e-13 77.4 75 62.7
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.0e-12 77.0 102 52.9
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.0e-12 77.0 95 51.6
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.3e-12 76.6 49 79.6
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.3e-12 76.6 49 79.6
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.3e-12 76.6 49 79.6
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 3.0e-12 75.5 65 64.6
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.0e-12 75.5 56 64.3
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.0e-12 75.5 49 69.4
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 3.0e-12 75.5 106 49.1
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 3.9e-12 75.1 52 73.1
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.9e-12 75.1 49 77.6
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 3.9e-12 75.1 97 52.6
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.1e-12 74.7 61 68.9
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.1e-12 74.7 61 68.9
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 6.7e-12 74.3 60 63.3
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 6.7e-12 74.3 57 68.4
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 8.7e-12 73.9 50 70.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.1e-11 73.6 95 52.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 1.9e-11 72.8 51 74.5
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.9e-11 72.8 95 50.5
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 2.5e-11 72.4 114 43.0
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.5e-11 72.4 50 74.0
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 4.3e-11 71.6 78 55.1
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.3e-11 71.6 102 49.0
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.6e-11 71.2 49 75.5
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 5.6e-11 71.2 81 55.6
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 5.6e-11 71.2 107 47.7
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 7.4e-11 70.9 90 50.0
Peaxi162Scf00202g00010 Petunia axillaris HOM05D006882 ORTHO05D008688 1.3e-10 70.1 47 78.7
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 2.1e-10 69.3 50 76.0
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 2.8e-10 68.9 73 57.5
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.6e-10 68.6 62 66.1
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 3.6e-10 68.6 47 74.5
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 3.6e-10 68.6 79 51.9
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 4.8e-10 68.2 76 52.6
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 6.2e-10 67.8 100 46.0
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 8.1e-10 67.4 79 57.0
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 8.1e-10 67.4 48 70.8
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 8.1e-10 67.4 51 62.7
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 1.1e-09 67.0 102 41.2
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 60 56.7
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.4e-09 66.6 87 47.1
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.4e-09 66.6 62 64.5
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 1.4e-09 66.6 100 45.0
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.4e-09 66.6 95 46.3
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.8e-09 66.2 51 68.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.8e-09 66.2 91 46.2
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 1.8e-09 66.2 108 46.3
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.8e-09 66.2 108 44.4
Peaxi162Scf00271g00524 Petunia axillaris HOM05D006882 ORTHO05D008688 1.8e-09 66.2 106 45.3
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.4e-09 65.9 106 46.2
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 3.1e-09 65.5 87 46.0
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 3.1e-09 65.5 70 54.3
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 3.1e-09 65.5 57 59.6
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.0e-09 65.1 106 44.3
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 4.0e-09 65.1 50 66.0
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 6.9e-09 64.3 56 57.1
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 6.9e-09 64.3 89 44.9
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 6.9e-09 64.3 89 44.9
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 6.9e-09 64.3 110 41.8
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 6.9e-09 64.3 117 43.6
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 6.9e-09 64.3 50 66.0
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 6.9e-09 64.3 46 69.6
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 6.9e-09 64.3 54 61.1
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 6.9e-09 64.3 99 43.4
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 9.0e-09 63.9 78 52.6
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.5e-08 63.2 76 52.6
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.5e-08 63.2 95 45.3
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.5e-08 63.2 116 38.8
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 2.6e-08 62.4 51 60.8
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 3.4e-08 62.0 99 42.4
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 3.4e-08 62.0 51 64.7
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 4.5e-08 61.6 51 60.8
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.5e-08 61.6 67 52.2
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 4.5e-08 61.6 51 60.8
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 4.5e-08 61.6 51 60.8
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 7.6e-08 60.8 50 62.0
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 7.6e-08 60.8 84 42.9
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 9.9e-08 60.5 86 44.2
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 9.9e-08 60.5 94 42.6
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.7e-07 59.7 55 56.4
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 2.2e-07 59.3 50 60.0
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.2e-07 59.3 52 65.4
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 2.9e-07 58.9 49 63.3
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 2.9e-07 58.9 103 41.7
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 2.4e-06 55.8 60 51.7
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 2.4e-06 55.8 89 44.9
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 3.2e-06 55.5 48 64.6
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 5.5e-06 54.7 59 54.2
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 7.1e-06 54.3 57 57.9
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 9.3e-06 53.9 54 59.3
Nitab4.5_0007320g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 9.3e-06 53.9 44 75.0


User provided reference genes

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