Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.2e-269 932.9 595 100.0
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 5.4e-238 827.8 595 93.1
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 4.7e-234 814.7 594 91.6
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.7e-215 753.1 605 81.0
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 4.4e-200 701.8 605 78.2
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 4.2e-190 668.7 604 75.0
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.1e-185 654.1 605 77.4
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 3.2e-113 413.3 464 63.6
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 7.3e-110 402.1 516 57.8
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 2.6e-107 393.7 531 57.6
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 3.7e-106 389.8 524 56.7
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 6.4e-106 389.0 448 67.9
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 3.5e-104 383.3 459 63.2
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 1.9e-102 377.5 583 52.5
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 4.3e-102 376.3 549 60.5
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 7.3e-102 375.6 449 62.6
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.8e-101 373.6 447 62.9
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 8.1e-101 372.1 465 60.4
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.3e-100 370.5 446 62.3
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 4.0e-100 369.8 558 52.3
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 8.9e-100 368.6 442 68.3
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.4e-99 366.7 464 57.5
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.3e-98 364.8 459 62.1
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 2.9e-98 363.6 447 61.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.4e-97 360.5 464 57.1
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 3.2e-97 360.1 463 58.5
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 1.2e-96 358.2 463 63.3
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 3.0e-95 353.6 463 61.8
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 6.6e-95 352.4 473 60.9
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 8.6e-95 352.1 495 55.8
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 1.1e-94 351.7 531 51.8
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 7.3e-94 349.0 522 54.2
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 1.2e-93 348.2 459 62.5
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 6.2e-93 345.9 437 61.3
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 8.1e-93 345.5 437 62.5
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 1.8e-92 344.4 466 56.0
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 1.8e-92 344.4 445 63.4
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 2.3e-92 344.0 416 68.5
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 2.3e-92 344.0 467 58.2
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.2e-91 341.7 445 62.0
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 2.6e-91 340.5 504 53.4
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 3.4e-91 340.1 450 57.6
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 4.4e-91 339.7 449 63.3
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.3e-90 338.2 447 63.1
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.7e-90 337.8 444 58.3
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 6.4e-90 335.9 541 50.8
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 6.4e-90 335.9 444 51.8
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.9e-89 334.3 563 54.2
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.2e-89 333.6 447 57.9
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 5.4e-89 332.8 450 57.1
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 5.4e-89 332.8 442 58.8
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 1.6e-88 331.3 383 65.5
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 3.5e-88 330.1 443 62.3
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 4.6e-88 329.7 444 52.9
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.3e-87 327.4 533 55.9
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 3.9e-87 326.6 442 62.7
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 3.9e-87 326.6 452 59.3
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 5.1e-87 326.2 453 57.4
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 4.3e-86 323.2 449 56.8
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 1.6e-85 321.2 439 57.4
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 1.4e-84 318.2 439 58.1
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.8e-84 317.8 442 63.6
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 4.0e-84 316.6 442 56.1
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.6e-83 313.9 390 59.7
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 7.6e-83 312.4 458 53.9
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 1.3e-82 311.6 442 55.9
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 2.9e-82 310.5 465 58.1
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 3.8e-82 310.1 433 56.4
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 2.4e-81 307.4 450 62.0
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 1.6e-80 304.7 405 65.4
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.1e-80 304.3 450 62.4
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 2.7e-80 303.9 386 63.0
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 3.0e-79 300.4 442 57.5
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 2.4e-76 290.8 450 59.3
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 2.4e-76 290.8 449 50.6
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 2.6e-75 287.3 505 47.9
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 3.4e-75 287.0 450 59.1
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 4.9e-74 283.1 388 59.5
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 5.4e-73 279.6 463 54.0
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 9.3e-73 278.9 435 59.5
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 2.1e-72 277.7 568 50.2
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 1.0e-71 275.4 448 49.3
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.3e-71 275.0 425 58.4
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.7e-71 274.6 483 34.0
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 3.9e-71 273.5 518 55.0
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 5.6e-70 269.6 450 54.2
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.2e-64 251.9 544 51.7
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.5e-62 245.0 408 54.2
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 3.3e-62 243.8 391 38.6
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 3.3e-62 243.8 391 38.6
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.7e-58 231.5 586 44.4
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 1.6e-56 224.9 414 52.7
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.0e-55 222.2 452 49.8
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.0e-55 222.2 452 49.8
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 5.3e-52 209.9 447 54.4
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 3.9e-47 193.7 396 51.8
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 5.7e-46 189.9 196 51.0
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 4.1e-44 183.7 161 57.8
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 4.1e-44 183.7 161 57.8
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 6.5e-42 176.4 185 49.2
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 8.5e-42 176.0 193 50.3
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 8.2e-37 159.5 174 47.1
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 3.8e-34 150.6 314 31.5
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 7.7e-27 126.3 104 64.4
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.6e-11 75.5 111 39.6
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.6e-11 75.5 111 39.6
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 2.7e-11 74.7 149 30.2
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 2.5e-09 68.2 155 27.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-08 65.9 139 28.8
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-08 65.9 139 28.8
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 2.8e-08 64.7 141 31.9
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.6e-08 64.3 145 29.0
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.3e-07 61.6 140 28.6
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.3e-07 61.6 141 28.4
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 3.0e-07 61.2 132 27.3
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 4.0e-07 60.8 140 28.6
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 4.0e-07 60.8 150 26.7
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 5.2e-07 60.5 117 30.8
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 8.8e-07 59.7 157 26.1
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 1.2e-06 59.3 152 28.3
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.2e-06 59.3 136 28.7
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.5e-06 58.9 136 28.7
AagrBONN_evm.TU.Sc2ySwM_117.1663__1664 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 58.5 152 27.6
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 2.6e-06 58.2 153 24.8
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 2.6e-06 58.2 142 27.5
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 2.6e-06 58.2 147 26.5
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 3.4e-06 57.8 136 27.9
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 3.4e-06 57.8 157 26.1
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 3.4e-06 57.8 164 26.2
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 3.4e-06 57.8 153 26.1
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 3.4e-06 57.8 150 26.0
AagrBONN_evm.TU.Sc2ySwM_228.832 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-06 57.4 154 25.3
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 4.4e-06 57.4 136 27.9
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 4.4e-06 57.4 142 26.8
Thhalv10022616m.g Eutrema salsugineum HOM05D000001 ORTHO05D009488 7.5e-06 56.6 149 30.9
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 7.5e-06 56.6 133 29.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 9.8e-06 56.2 135 27.4


User provided reference genes

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