Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 7.0e-292 1006.5 497 100.0
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 4.9e-285 983.8 497 97.4
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.5e-209 733.0 498 73.7
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 8.6e-189 664.1 518 67.6
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 4.1e-167 592.0 567 58.2
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 2.2e-152 543.1 289 92.7
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 3.2e-151 539.3 484 56.8
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 1.3e-144 517.3 483 55.5
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 2.9e-144 516.2 490 54.7
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 2.4e-143 513.1 482 54.1
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 1.2e-142 510.8 496 54.0
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 1.7e-141 506.9 494 52.2
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 5.1e-141 505.4 493 54.2
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 2.5e-140 503.1 496 53.8
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 7.4e-140 501.5 489 53.4
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.6e-139 500.4 485 54.2
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 3.6e-139 499.2 483 53.2
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 4.0e-138 495.7 485 52.4
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 4.0e-138 495.7 485 52.0
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.3e-136 490.7 481 54.1
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 1.7e-136 490.3 496 50.6
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.7e-136 490.3 504 51.4
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 3.2e-135 486.1 476 53.6
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 3.2e-135 486.1 492 51.6
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 6.0e-134 481.9 488 50.4
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.0e-133 481.1 486 50.6
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 1.8e-133 480.3 496 51.6
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 1.3e-131 474.2 495 51.3
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 2.8e-131 473.0 486 49.4
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 1.1e-130 471.1 491 50.9
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 1.4e-130 470.7 486 50.4
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 6.9e-130 468.4 515 49.7
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 9.0e-130 468.0 505 50.9
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 1.5e-129 467.2 454 54.0
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 2.0e-129 466.8 494 50.8
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.0e-129 466.8 498 51.2
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.0e-129 466.8 561 47.4
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 2.6e-129 466.5 505 50.9
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 3.4e-129 466.1 496 49.6
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 4.5e-129 465.7 500 48.2
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 2.5e-127 459.9 466 50.2
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 3.2e-127 459.5 548 46.7
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.2e-127 459.1 506 50.0
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 5.5e-127 458.8 496 50.4
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 6.0e-126 455.3 487 48.5
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 7.9e-126 454.9 511 49.3
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 1.0e-125 454.5 489 51.9
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.0e-125 454.5 588 46.3
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 3.0e-125 453.0 488 47.7
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 3.9e-125 452.6 506 50.6
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 1.1e-124 451.1 500 49.8
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.7e-120 437.2 487 49.7
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 6.5e-120 435.3 499 49.5
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 3.2e-119 433.0 501 47.9
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 3.2e-119 433.0 480 49.4
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 9.3e-119 431.4 493 48.1
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 2.7e-118 429.9 480 47.1
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 2.7e-118 429.9 508 47.2
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 6.1e-118 428.7 487 48.7
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 7.9e-118 428.3 501 46.7
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 6.7e-117 425.2 459 50.8
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 1.9e-116 423.7 497 47.1
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 5.7e-116 422.2 485 46.2
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 5.3e-114 415.6 355 58.0
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 5.3e-114 415.6 485 47.8
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 5.0e-112 409.1 468 46.8
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 2.5e-111 406.8 489 46.4
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 7.2e-111 405.2 394 53.8
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.8e-109 400.6 477 45.1
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 4.5e-105 386.0 584 41.1
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 7.2e-103 378.6 366 54.6
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 7.2e-103 378.6 498 42.8
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 4.7e-102 375.9 460 46.1
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 7.9e-102 375.2 460 46.1
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 8.2e-99 365.2 487 45.4
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 1.3e-96 357.8 397 46.3
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.3e-96 357.8 452 45.4
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 2.7e-94 350.1 498 41.8
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 6.1e-94 349.0 427 44.5
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 2.6e-92 343.6 346 55.2
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 2.0e-89 334.0 491 42.0
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 8.5e-88 328.6 497 40.8
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 1.9e-87 327.4 406 47.0
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 3.4e-84 316.6 523 39.0
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 1.9e-79 300.8 324 50.0
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 8.6e-72 275.4 513 36.3
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 1.2e-70 271.6 363 45.5
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 2.6e-60 237.3 465 35.7
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 6.0e-57 226.1 220 55.5
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 1.3e-56 224.9 434 34.3
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 2.9e-43 180.6 244 45.1
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 1.7e-40 171.4 188 49.5
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 1.5e-31 141.7 183 45.9
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 1.9e-26 124.8 180 36.7
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 2.4e-21 107.8 137 46.7
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 3.2e-18 97.4 120 41.7
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 9.3e-18 95.9 128 43.0
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 3.3e-15 87.4 71 59.2
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 4.3e-15 87.0 127 40.2
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 8.2e-14 82.8 172 36.0
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 8.2e-14 82.8 172 36.0
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 5.3e-13 80.1 139 36.7
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 1.2e-12 79.0 72 52.8
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 3.4e-12 77.4 156 36.5
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 4.9e-11 73.6 115 44.3
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 1.2e-09 68.9 51 54.9
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 1.6e-09 68.6 60 56.7
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 3.5e-09 67.4 86 39.5
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 6.0e-09 66.6 180 30.6
FAN19G2836 Fragaria x ananassa HOM05D007272 ORTHO05D045475 5.7e-07 60.1 38 68.4


User provided reference genes

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