Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 8.3e-99 363.6 173 100.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.9e-87 325.9 156 99.4
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.0e-84 315.8 156 94.9
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.2e-82 308.1 148 98.0
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.2e-82 308.1 148 98.0
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.3e-80 303.1 156 89.1
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 3.3e-79 298.5 155 87.7
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.7e-75 286.2 153 85.0
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.7e-75 286.2 154 84.4
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.2e-75 285.8 153 85.0
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.2e-75 285.8 153 85.0
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.9e-75 284.6 153 84.3
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.2e-74 281.6 153 83.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.4e-74 281.2 148 85.8
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.6e-73 279.6 151 83.4
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.1e-73 279.3 151 82.8
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 2.1e-73 279.3 154 82.5
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 3.9e-72 275.0 153 81.0
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 6.6e-72 274.2 153 81.0
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 8.7e-72 273.9 154 81.8
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.5e-71 273.1 146 85.6
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.9e-71 272.7 153 81.7
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.9e-71 272.7 153 80.4
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.5e-71 272.3 153 81.7
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.3e-71 271.9 153 79.7
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 3.3e-71 271.9 153 80.4
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 3.3e-71 271.9 153 80.4
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 5.6e-71 271.2 151 81.5
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.6e-71 270.4 153 81.0
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.8e-70 268.9 153 77.8
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.8e-70 268.9 150 80.7
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 6.2e-70 267.7 144 83.3
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 8.1e-70 267.3 155 78.7
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.4e-69 265.8 155 78.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.3e-69 264.6 153 77.8
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 5.3e-69 264.6 154 77.9
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.5e-68 263.1 155 78.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 2.0e-68 262.7 145 82.8
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.6e-68 262.3 153 77.8
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.9e-68 260.4 153 78.4
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 9.9e-68 260.4 154 76.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 3.8e-67 258.5 152 77.6
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 6.4e-67 257.7 140 83.6
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 8.4e-67 257.3 148 77.7
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.1e-66 256.9 153 73.9
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.9e-66 256.1 143 82.5
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.9e-66 256.1 153 74.5
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.2e-66 255.4 140 82.9
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 4.2e-66 255.0 148 77.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 5.4e-66 254.6 155 72.9
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 7.1e-66 254.2 140 82.1
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.3e-66 253.8 151 74.2
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-65 253.1 138 83.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.1e-65 252.7 156 74.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.6e-65 251.5 144 78.5
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 4.6e-65 251.5 155 72.9
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.0e-65 251.1 153 74.5
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 6.0e-65 251.1 153 73.2
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 6.0e-65 251.1 155 73.5
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.0e-65 251.1 155 72.3
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 7.9e-65 250.8 155 72.3
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 7.9e-65 250.8 153 73.2
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.8e-64 249.6 142 77.5
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.8e-64 249.6 155 71.0
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.3e-64 249.2 153 73.2
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 3.9e-64 248.4 155 72.9
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 6.7e-64 247.7 155 72.9
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 6.7e-64 247.7 155 71.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 6.7e-64 247.7 155 71.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 8.7e-64 247.3 145 75.9
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.9e-63 246.1 155 75.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 2.5e-63 245.7 155 71.6
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-63 245.7 151 72.2
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-63 245.7 151 72.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.5e-63 245.7 148 73.6
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 3.3e-63 245.4 153 70.6
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 7.4e-63 244.2 155 70.3
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 7.4e-63 244.2 155 69.7
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.3e-62 243.4 153 70.6
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.6e-62 243.0 149 73.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.1e-62 242.7 153 73.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-62 242.3 142 75.4
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-62 242.3 142 75.4
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.8e-62 242.3 151 70.9
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 2.8e-62 242.3 155 69.7
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 3.7e-62 241.9 142 75.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.7e-62 241.9 144 75.0
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.8e-62 241.5 142 75.4
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 8.1e-62 240.7 151 70.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.1e-61 240.4 142 74.6
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.4e-61 240.0 148 73.0
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.4e-61 240.0 148 73.0
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 3.1e-61 238.8 155 69.7
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 9.0e-61 237.3 141 73.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.2e-60 236.9 150 70.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 3.4e-60 235.3 156 68.6
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.0e-59 233.8 142 71.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.3e-59 233.4 142 73.2
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.3e-59 233.4 142 71.8
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.9e-59 232.3 142 71.8
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 4.9e-59 231.5 153 66.7
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 8.4e-59 230.7 138 73.9
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-58 230.3 145 71.7
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.9e-58 229.6 153 67.3
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 3.2e-58 228.8 143 72.7
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.2e-58 228.4 123 85.4
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.5e-58 228.0 142 70.4
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.6e-57 224.9 142 71.1
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 7.9e-57 224.2 151 66.9
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 7.9e-57 224.2 135 72.6
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 9.6e-55 217.2 151 70.2
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.3e-54 216.9 156 63.5
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.6e-54 216.5 153 64.7
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.6e-54 216.5 142 66.9
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.8e-48 196.4 108 82.4
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 6.3e-46 188.0 155 59.4
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.7e-43 179.9 152 52.6
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.1e-42 177.2 152 52.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.2e-41 173.7 122 63.9
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.8e-40 169.9 128 60.2
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 2.0e-39 166.4 153 56.9
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.2e-38 162.9 123 61.8
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.8e-38 161.8 103 72.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.1e-37 159.1 149 51.7
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.0e-36 156.4 97 74.2
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 2.9e-35 152.5 126 56.3
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 3.8e-35 152.1 154 49.4
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.1e-33 146.4 154 47.4
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 3.9e-32 142.1 153 47.7
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.4e-31 137.9 138 53.6
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.3e-30 137.1 166 48.2
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.2e-30 136.3 166 48.2
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 3.7e-30 135.6 89 70.8
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.8e-29 133.3 155 42.6
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.1e-29 132.1 154 44.8
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.1e-25 119.8 66 84.8
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.1e-21 105.5 132 42.4
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-15 87.0 62 64.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.2e-12 77.4 53 66.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.7e-12 76.3 120 37.5
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 3.8e-11 72.4 62 59.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.2e-10 68.2 58 55.2
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.7e-09 66.2 48 60.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.3e-06 57.4 46 56.5
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.3e-06 57.4 40 62.5


User provided reference genes

Program Settings