Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 2.0e-283 978.4 483 100.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 7.8e-280 966.5 483 99.0
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.2e-272 942.6 483 96.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.4e-260 902.5 483 91.1
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.4e-260 901.7 483 91.7
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 5.8e-259 897.1 484 91.7
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.8e-221 771.9 486 77.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.4e-220 768.8 484 77.9
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 6.5e-218 760.8 487 76.4
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 8.5e-218 760.4 484 76.2
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.2e-217 758.4 486 75.3
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.5e-217 757.7 497 75.3
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.1e-216 755.7 486 74.9
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.8e-215 752.7 486 75.9
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.3e-215 752.3 464 77.4
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.0e-215 751.5 492 75.2
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.3e-213 746.5 486 76.3
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.7e-213 746.1 484 75.4
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.7e-213 746.1 491 74.3
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.7e-213 746.1 484 75.4
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.8e-213 745.3 483 75.8
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.1e-212 743.4 498 74.1
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 3.1e-212 741.9 489 75.5
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 7.0e-212 740.7 487 74.5
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.2e-211 740.0 487 73.9
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.6e-211 739.6 501 72.7
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 2.7e-211 738.8 485 73.6
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 2.7e-211 738.8 527 70.0
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.5e-211 738.0 426 81.0
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 5.9e-211 737.6 495 73.7
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.0e-210 736.9 487 73.7
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 2.9e-210 735.3 533 69.2
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 3.3e-209 731.9 484 74.6
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 4.2e-209 731.5 488 73.2
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 7.2e-209 730.7 491 74.1
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 8.0e-208 727.2 451 77.2
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.0e-207 726.9 488 72.7
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.4e-207 726.5 489 73.0
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.8e-207 726.1 481 73.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 3.0e-207 725.3 488 74.2
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.2e-207 724.5 486 73.5
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 5.7e-206 721.1 459 74.9
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 9.8e-206 720.3 522 69.7
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.2e-205 719.2 493 72.6
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 2.8e-205 718.8 487 74.3
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 3.1e-204 715.3 488 70.5
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.1e-204 715.3 473 74.4
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 4.1e-204 714.9 432 77.1
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.4e-204 714.5 461 74.6
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 7.0e-204 714.1 425 77.2
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.2e-203 713.4 464 73.9
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.6e-203 713.0 432 76.2
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 3.5e-203 711.8 493 71.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 4.5e-203 711.4 458 73.8
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.9e-203 711.1 493 72.0
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 7.8e-203 710.7 486 71.6
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.0e-202 710.3 425 76.7
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 2.3e-202 709.1 488 70.9
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 2.9e-202 708.8 455 75.6
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 6.6e-202 707.6 425 76.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 6.6e-202 707.6 463 74.1
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.1e-201 706.8 490 71.8
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.5e-201 706.4 455 74.9
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.9e-201 706.1 433 76.9
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 3.3e-201 705.3 486 70.8
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 4.3e-201 704.9 425 76.0
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 7.3e-201 704.1 487 70.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.2e-200 703.4 469 72.9
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.0e-199 700.3 487 69.8
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 2.3e-199 699.1 489 69.5
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.3e-199 699.1 486 69.8
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.3e-199 699.1 486 69.8
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.3e-199 699.1 483 70.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.0e-199 698.7 485 70.9
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.2e-198 696.8 488 69.3
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.5e-198 696.4 483 71.4
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.5e-198 696.4 426 77.5
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 9.8e-198 693.7 487 69.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 9.8e-198 693.7 487 69.6
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.9e-197 691.4 425 75.8
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.4e-196 689.1 423 75.7
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 5.4e-196 688.0 437 76.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 9.2e-196 687.2 445 74.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.0e-194 681.4 424 73.8
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.6e-192 676.4 433 74.1
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 4.7e-192 674.9 401 78.3
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.3e-191 672.5 421 76.2
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.9e-189 665.6 405 76.8
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 4.1e-188 661.8 390 82.6
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 3.5e-187 658.7 456 70.0
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.0e-186 655.6 459 72.5
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.3e-185 652.1 461 68.3
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.8e-184 649.0 378 80.4
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.4e-182 641.7 540 61.9
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 4.9e-181 638.3 465 67.1
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 6.6e-178 627.9 487 66.3
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.5e-177 625.9 378 78.3
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.2e-176 621.3 411 72.0
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 6.8e-175 617.8 469 66.7
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.4e-172 610.1 472 62.5
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 3.2e-172 609.0 394 73.4
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-169 600.1 440 65.5
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 5.8e-166 588.2 475 62.5
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.9e-165 585.9 493 61.7
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 2.3e-162 576.2 503 56.9
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 5.1e-162 575.1 341 78.0
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.5e-161 572.8 378 73.5
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.3e-154 550.4 413 65.1
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 9.9e-150 534.3 378 69.0
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.9e-148 530.0 471 57.3
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 1.5e-145 520.4 478 55.0
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.5e-142 510.4 326 74.8
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.4e-119 434.1 256 78.9
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.1e-116 424.5 391 54.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 3.9e-114 416.0 297 67.7
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 3.9e-114 416.0 297 67.7
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.6e-110 404.1 348 57.8
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-105 387.5 299 64.2
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.9e-100 370.5 270 68.5
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.2e-100 369.8 285 63.5
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 8.0e-99 365.2 264 67.4
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 1.8e-98 364.0 294 63.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.7e-88 329.7 383 45.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.9e-85 319.7 208 72.6
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.8e-82 310.8 234 70.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 5.6e-76 289.3 333 45.0
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 7.3e-68 262.3 252 54.8
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.2e-67 261.5 580 31.9
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.8e-51 207.2 473 32.1
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.3e-45 188.3 110 78.2
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 2.0e-41 174.5 150 62.7
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.0e-37 162.2 112 66.1
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 5.3e-34 149.8 90 81.1
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 4.6e-30 136.7 117 53.8
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 4.2e-23 113.6 74 74.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 8.7e-21 105.9 60 75.0
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.2e-17 95.5 92 53.3
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 7.7e-17 92.8 53 75.5
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.0e-16 92.4 70 62.9
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.7e-16 91.7 69 62.3
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.7e-16 91.7 69 62.3
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.2e-16 91.3 68 63.2
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 2.2e-16 91.3 69 62.3
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 2.2e-16 91.3 69 62.3
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.9e-16 90.9 68 63.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.9e-16 90.9 69 62.3
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 6.5e-16 89.7 69 60.9
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 8.5e-16 89.4 69 62.3
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.6e-14 84.0 69 62.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 3.3e-12 77.4 63 63.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 3.1e-10 70.9 85 43.5
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 8.5e-08 62.8 59 61.0
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.4e-07 62.0 45 66.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.2e-06 58.9 51 51.0


User provided reference genes

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