Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 1.3e-92 343.2 187 100.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 5.8e-90 334.3 187 97.3
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 4.3e-85 318.2 187 93.6
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.7e-70 267.7 188 81.4
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.0e-66 256.1 195 77.9
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.2e-58 230.3 188 72.9
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.2e-47 193.7 187 64.7
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 3.6e-39 165.6 187 56.1
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 3.0e-38 162.5 194 57.7
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.5e-37 160.2 185 57.8
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.6e-37 159.5 193 56.5
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.7e-37 158.3 116 73.3
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 9.8e-37 157.5 128 69.5
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 9.8e-37 157.5 196 52.6
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.3e-36 157.1 193 55.4
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.7e-36 156.8 185 50.8
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.7e-36 156.8 199 54.3
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.2e-36 156.4 184 52.7
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.9e-36 156.0 148 65.5
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 2.9e-36 156.0 139 64.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 3.7e-36 155.6 114 73.7
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 4.9e-36 155.2 137 66.4
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 6.4e-36 154.8 146 63.7
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 8.3e-36 154.5 185 50.3
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-35 153.7 192 54.7
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.8e-35 153.3 185 54.1
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.8e-35 153.3 188 53.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 4.1e-35 152.1 203 52.7
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 7.0e-35 151.4 194 53.1
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 9.2e-35 151.0 186 50.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 9.2e-35 151.0 186 52.2
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 9.2e-35 151.0 189 54.5
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.0e-34 149.8 185 50.8
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.7e-34 149.4 185 50.3
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 2.7e-34 149.4 96 82.3
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.5e-34 149.1 139 58.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.6e-34 148.7 92 84.8
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 4.6e-34 148.7 133 64.7
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 7.8e-34 147.9 95 82.1
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.3e-33 147.1 122 68.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.3e-33 147.1 114 68.4
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.7e-33 146.7 127 68.5
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 3.0e-33 146.0 184 50.0
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.9e-33 145.6 185 48.6
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.9e-33 145.6 186 52.7
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.0e-33 145.2 92 83.7
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 5.0e-33 145.2 203 51.2
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 6.6e-33 144.8 115 70.4
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 6.6e-33 144.8 190 51.1
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.1e-32 144.1 110 72.7
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.5e-32 143.7 156 55.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.9e-32 143.3 221 48.4
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.5e-32 142.9 113 69.0
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 2.5e-32 142.9 148 58.1
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.5e-32 142.9 148 58.1
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 3.3e-32 142.5 194 49.5
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.3e-32 142.5 93 75.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.3e-32 142.5 93 75.3
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.3e-32 142.5 93 75.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 3.3e-32 142.5 189 50.8
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 3.3e-32 142.5 189 50.8
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.3e-32 142.5 189 50.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 3.3e-32 142.5 124 65.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 5.6e-32 141.7 183 51.9
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 5.6e-32 141.7 136 60.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 9.5e-32 141.0 186 52.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 9.5e-32 141.0 117 70.1
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.5e-32 141.0 189 50.3
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.8e-31 139.4 194 49.0
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 4.7e-31 138.7 91 79.1
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 4.7e-31 138.7 91 79.1
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.2e-31 138.3 177 52.5
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 6.2e-31 138.3 96 75.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 8.0e-31 137.9 88 76.1
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.0e-30 137.5 96 72.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.0e-30 137.5 148 56.1
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.0e-30 137.5 82 87.8
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.4e-30 137.1 185 47.6
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.4e-30 137.1 190 49.5
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-30 136.7 185 48.6
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.8e-30 136.7 181 51.4
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.3e-30 136.3 190 49.5
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.3e-30 136.3 216 46.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.1e-30 136.0 96 71.9
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.0e-30 135.6 180 55.0
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.0e-30 135.6 180 53.3
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 5.2e-30 135.2 184 50.5
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 8.9e-30 134.4 187 48.7
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.9e-30 134.4 152 55.9
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 8.9e-30 134.4 136 59.6
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 8.9e-30 134.4 142 58.5
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 2.0e-29 133.3 185 47.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.6e-29 132.9 109 67.9
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.6e-29 132.9 106 67.0
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 4.4e-29 132.1 141 58.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 5.8e-29 131.7 225 41.3
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 9.8e-29 131.0 189 50.3
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.7e-28 130.2 94 73.4
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.9e-28 129.4 92 72.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 3.7e-28 129.0 120 61.7
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 4.9e-28 128.6 125 57.6
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.9e-28 128.6 189 47.1
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.4e-28 128.3 185 47.0
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.4e-27 126.3 95 68.4
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.2e-26 124.0 98 66.3
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-24 117.1 79 72.2
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 7.3e-24 114.8 77 74.0
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.1e-23 113.2 72 80.6
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 4.0e-22 109.0 73 75.3
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 5.2e-22 108.6 109 56.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 4.4e-21 105.5 164 42.7
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 7.5e-21 104.8 78 65.4
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.4e-19 98.6 101 54.5
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.1e-18 96.7 155 43.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.0e-18 95.1 107 50.5
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 3.9e-17 92.4 146 42.5
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 5.1e-17 92.0 105 49.5
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.3e-16 88.2 57 78.9
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.2e-13 80.9 107 49.5
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.4e-13 79.0 105 41.0
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.9e-13 77.8 80 63.8
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.4e-11 73.9 58 70.7
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.4e-11 73.2 150 39.3
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 3.2e-11 72.8 127 46.5
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 3.5e-10 69.3 43 81.4
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 3.9e-09 65.9 78 50.0
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.3e-08 62.8 125 44.0
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 4.3e-08 62.4 136 39.7
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.7e-07 58.9 122 30.3
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 8.9e-06 54.7 39 64.1


User provided reference genes

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