Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g031530 Solanum pennellii HOM05D000089 ORTHO05D005030 4.8e-39 164.1 86 100.0
Sopen02g031540 Solanum pennellii HOM05D000089 ORTHO05D005030 6.3e-31 137.1 74 97.3
Solyc02g086770.3 Solanum lycopersicum HOM05D000089 ORTHO05D005030 1.2e-29 132.9 74 94.6
PGSC0003DMG400000521 Solanum tuberosum HOM05D000089 ORTHO05D005030 2.0e-29 132.1 74 91.9
CAN.G206.21 Capsicum annuum HOM05D000089 ORTHO05D005030 7.7e-21 103.6 76 75.0
Nitab4.5_0000372g0020 Nicotiana tabacum HOM05D000089 ORTHO05D005030 2.1e-18 95.5 71 67.6
Nitab4.5_0006281g0010 Nicotiana tabacum HOM05D000089 ORTHO05D005030 1.0e-17 93.2 71 67.6
Peaxi162Scf00129g01233 Petunia axillaris HOM05D000089 ORTHO05D005030 1.0e-12 76.6 66 57.6
CSS0020720 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D005030 2.5e-11 72.0 70 51.4
Migut.H00107 Erythranthe guttata HOM05D000089 ORTHO05D005030 2.5e-11 72.0 61 54.1
DCAR_021691 Daucus carota HOM05D000089 ORTHO05D005030 3.3e-11 71.6 55 61.8
Oeu043046.1 Olea europaea HOM05D000089 ORTHO05D005030 3.3e-11 71.6 71 54.9
Lju41A36T59 Lonicera japonica HOM05D000089 ORTHO05D005030 9.5e-11 70.1 68 51.5
MSTRG.24023 Avicennia marina HOM05D000089 ORTHO05D005030 1.2e-10 69.7 61 55.7
vmacro18256 Vaccinium macrocarpon HOM05D000089 ORTHO05D005030 1.2e-10 69.7 55 65.5
Cc07_g02110 Coffea canephora HOM05D000089 ORTHO05D005030 1.6e-10 69.3 65 56.9
Rhsim08G0053700 Rhododendron simsii HOM05D000089 ORTHO05D005030 2.1e-10 68.9 76 50.0
Oeu062927.1 Olea europaea HOM05D000089 ORTHO05D005030 2.8e-10 68.6 71 54.9
Sabra16G0229000 Salix brachista HOM05D000089 ORTHO05D005030 4.7e-10 67.8 68 51.5
Thecc.04G011200 Theobroma cacao HOM05D000089 ORTHO05D005030 4.7e-10 67.8 55 58.2
Duzib147G0579 Durio zibethinus HOM05D000089 ORTHO05D005030 6.1e-10 67.4 65 53.8
MSTRG.3165 Avicennia marina HOM05D000089 ORTHO05D005030 1.0e-09 66.6 60 53.3
Actinidia35748 Actinidia chinensis HOM05D000089 ORTHO05D005030 1.8e-09 65.9 70 48.6
COL.COLO4_28992 Corchorus olitorius HOM05D000089 ORTHO05D005030 1.8e-09 65.9 65 53.8
Atru.chr6.2315 Acer truncatum HOM05D000089 ORTHO05D005030 3.0e-09 65.1 65 49.2
Atru.chr6.2222 Acer truncatum HOM05D000089 ORTHO05D005030 4.0e-09 64.7 65 49.2
Prupe.3G286200 Prunus persica HOM05D000089 ORTHO05D005030 4.0e-09 64.7 68 48.5
Dinv35077 Davidia involucrata HOM05D000089 ORTHO05D005030 5.2e-09 64.3 68 45.6
Duzib264G0889 Durio zibethinus HOM05D000089 ORTHO05D005030 5.2e-09 64.3 62 56.5
FvH4_6g50850 Fragaria vesca HOM05D000089 ORTHO05D005030 5.2e-09 64.3 69 47.8
Aqoxy3G01042 Aquilegia oxysepala HOM05D000089 ORTHO05D005030 6.8e-09 63.9 69 46.4
Thhalv10005604m.g Eutrema salsugineum HOM05D000089 ORTHO05D005030 6.8e-09 63.9 65 47.7
FAN02G0995 Fragaria x ananassa HOM05D000089 ORTHO05D005030 6.8e-09 63.9 69 46.4
HanXRQChr17g0548221 Helianthus annuus HOM05D000089 ORTHO05D005030 6.8e-09 63.9 61 50.8
MD09G1031700 Malus domestica HOM05D000089 ORTHO05D005030 8.9e-09 63.5 81 45.7
Sp2g16910 Schrenkiella parvula HOM05D000089 ORTHO05D005030 8.9e-09 63.5 64 50.0
Ciclev10015683m.g Citrus clementina HOM05D000089 ORTHO05D005030 1.2e-08 63.2 65 47.7
FAN05G1485 Fragaria x ananassa HOM05D000089 ORTHO05D005030 1.2e-08 63.2 69 46.4
THA.LOC104825332 Tarenaya hassleriana HOM05D000089 ORTHO05D005030 1.2e-08 63.2 70 42.9
GSVIVG01032458001 Vitis vinifera HOM05D000089 ORTHO05D005030 1.2e-08 63.2 70 48.6
Carub.0005s0640 Capsella rubella HOM05D000089 ORTHO05D005030 2.0e-08 62.4 64 48.4
FAN14G4239 Fragaria x ananassa HOM05D000089 ORTHO05D005030 2.0e-08 62.4 69 46.4
Gohir.D09G026500 Gossypium hirsutum HOM05D000089 ORTHO05D005030 2.0e-08 62.4 66 51.5
Gorai.006G030500 Gossypium raimondii HOM05D000089 ORTHO05D005030 2.0e-08 62.4 66 51.5
RcHm_v2.0_Chr2g0172231 Rosa chinensis HOM05D000089 ORTHO05D005030 2.0e-08 62.4 70 47.1
TAR374G0957 Trochodendron aralioides HOM05D000089 ORTHO05D005030 2.0e-08 62.4 55 54.5
Gohir.A05G358700 Gossypium hirsutum HOM05D000089 ORTHO05D005030 3.4e-08 61.6 65 49.2
Gohir.D04G055400 Gossypium hirsutum HOM05D000089 ORTHO05D005030 3.4e-08 61.6 55 54.5
Gorai.012G062200 Gossypium raimondii HOM05D000089 ORTHO05D005030 3.4e-08 61.6 55 54.5
HanXRQChr15g0475041 Helianthus annuus HOM05D000089 ORTHO05D005030 3.4e-08 61.6 55 52.7
SGA_v2.0_scaffold205G41684 Striga asiatica HOM05D000089 ORTHO05D005030 3.4e-08 61.6 89 42.7
Gohir.A09G026800 Gossypium hirsutum HOM05D000089 ORTHO05D005030 4.4e-08 61.2 66 51.5
ECA246G2377 Erigeron canadensis HOM05D000089 ORTHO05D005030 7.5e-08 60.5 65 44.6
SGA_v2.0_scaffold135G34884 Striga asiatica HOM05D000089 ORTHO05D005030 7.5e-08 60.5 87 40.2
Cfa007416 Carpinus fangiana HOM05D000089 ORTHO05D005030 9.8e-08 60.1 53 60.4
MD17G1033400 Malus domestica HOM05D000089 ORTHO05D005030 9.8e-08 60.1 81 44.4
Potri.001G349600 Populus trichocarpa HOM05D000089 ORTHO05D005030 1.3e-07 59.7 55 52.7
TWI12G0349 Tripterygium wilfordii HOM05D000089 ORTHO05D005030 1.3e-07 59.7 55 52.7
Medtr6g406250 Medicago truncatula HOM05D000089 ORTHO05D005030 1.7e-07 59.3 55 47.3
TPR.G35383 Trifolium pratense HOM05D000089 ORTHO05D005030 2.2e-07 58.9 69 40.6
Eucgr.I01783 Eucalyptus grandis HOM05D000089 ORTHO05D005030 2.8e-07 58.5 58 51.7
QL02p076006 Quercus lobata HOM05D000089 ORTHO05D005030 4.9e-07 57.8 64 46.9
SalBow1G1571 Salvia bowleyana HOM05D000089 ORTHO05D005030 4.9e-07 57.8 55 52.7
Sc03g0007990 Simmondsia chinensis HOM05D000089 ORTHO05D005030 6.3e-07 57.4 73 45.2
CANSAT64G1226 Cannabis sativa HOM05D000089 ORTHO05D005030 1.1e-06 56.6 89 41.6
Haze_14686 Corylus avellana HOM05D000089 ORTHO05D005030 1.1e-06 56.6 53 58.5
Lsat_1_v5_gn_0_38980 Lactuca sativa HOM05D000089 ORTHO05D005030 1.1e-06 56.6 64 46.9
Manes.17G115900 Manihot esculenta HOM05D000089 ORTHO05D005030 1.1e-06 56.6 64 43.8
CARHR198610 Cardamine hirsuta HOM05D000089 ORTHO05D005030 1.4e-06 56.2 73 46.6
Haze_14685 Corylus avellana HOM05D000089 ORTHO05D005030 2.4e-06 55.5 55 52.7
Lalb_Chr06g0175971 Lupinus albus HOM05D000089 ORTHO05D005030 2.4e-06 55.5 69 37.7
Manes.15G165400 Manihot esculenta HOM05D000089 ORTHO05D005030 2.4e-06 55.5 68 41.2
MBI10_g18316_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D005030 3.1e-06 55.1 83 38.6
BcaNung03103 Brassica carinata HOM05D000089 ORTHO05D005030 4.1e-06 54.7 72 43.1
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 4.1e-06 54.7 62 48.4
arahy.Tifrunner.gnm1.ann1.NZB2J0 Arachis hypogaea HOM05D000089 ORTHO05D005030 5.4e-06 54.3 78 37.2
Ca_04186_v3 Cicer arietinum L. HOM05D000089 ORTHO05D005030 5.4e-06 54.3 55 45.5
Lsat_1_v5_gn_0_38960 Lactuca sativa HOM05D000089 ORTHO05D005030 5.4e-06 54.3 60 45.0
Sed0022000 Sechium edule HOM05D000089 ORTHO05D005030 5.4e-06 54.3 58 46.6
ClCG10G014160 Citrullus lanatus HOM05D000089 ORTHO05D005030 7.0e-06 53.9 54 50.0
FAN09G1817 Fragaria x ananassa HOM05D000089 ORTHO05D005030 7.0e-06 53.9 54 53.7


User provided reference genes

Program Settings