Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 3.5e-180 634.8 313 100.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 2.1e-177 625.5 313 98.4
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.4e-173 612.1 313 96.2
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.8e-169 598.6 313 93.0
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.8e-169 598.6 311 93.6
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 3.6e-169 598.2 313 92.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.4e-146 520.8 310 81.6
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.4e-146 520.8 310 81.6
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 3.8e-142 508.4 312 79.5
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 6.5e-142 507.7 312 79.5
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.4e-141 506.5 312 79.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.7e-140 502.3 328 76.5
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.5e-140 501.9 312 79.2
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 6.0e-140 501.1 309 79.3
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 6.0e-140 501.1 310 78.4
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.0e-139 500.4 309 79.0
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 1.0e-139 500.4 309 80.3
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.3e-139 499.2 310 79.4
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 3.9e-139 498.4 309 79.0
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 3.9e-139 498.4 309 79.0
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 8.7e-139 497.3 309 79.6
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.9e-138 496.1 309 78.6
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.9e-138 496.1 309 79.0
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 3.3e-138 495.4 309 79.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 7.4e-138 494.2 314 77.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.3e-137 493.4 310 78.7
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.7e-137 491.9 309 79.0
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 4.8e-137 491.5 309 76.7
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 78.0
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 78.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 76.7
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.8e-136 489.6 309 78.3
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.8e-136 489.6 311 78.1
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.4e-136 489.2 309 78.3
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.4e-136 489.2 305 78.4
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 9.0e-136 487.3 309 76.4
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 9.0e-136 487.3 311 77.8
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.2e-135 486.9 309 76.4
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.5e-135 486.5 309 76.7
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-135 486.1 306 76.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 2.0e-135 486.1 318 77.7
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.0e-135 486.1 309 78.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.6e-135 485.7 309 77.3
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.6e-135 485.7 310 76.5
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-135 485.3 309 77.0
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.5e-135 485.0 305 78.4
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.9e-135 484.6 312 78.5
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 7.6e-135 484.2 313 78.3
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 7.6e-135 484.2 305 77.4
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.0e-134 483.8 310 77.7
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.0e-134 483.8 309 77.3
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.9e-134 482.3 309 78.0
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.9e-134 482.3 309 77.3
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 2.9e-134 482.3 310 76.8
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 5.0e-134 481.5 309 78.3
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 8.5e-134 480.7 311 76.8
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.5e-133 479.2 305 77.4
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 4.2e-133 478.4 309 77.0
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 5.5e-133 478.0 313 75.1
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 9.4e-133 477.2 310 76.1
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.7e-132 475.7 309 77.0
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.6e-132 475.3 312 75.6
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.6e-132 474.9 309 77.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 4.6e-132 474.9 312 75.3
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.0e-131 473.8 310 76.8
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.9e-131 471.9 311 76.2
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 5.1e-131 471.5 310 75.8
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 5.1e-131 471.5 310 76.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.7e-131 471.1 308 76.9
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 6.7e-131 471.1 310 77.1
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.3e-130 468.8 314 75.2
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.3e-130 468.4 329 70.8
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 5.7e-130 468.0 309 76.4
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 7.4e-130 467.6 306 77.8
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.7e-129 466.5 311 77.8
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 4.8e-129 464.9 305 76.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 8.2e-129 464.2 309 75.7
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.4e-128 463.4 299 75.9
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.4e-128 462.6 309 74.4
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 3.1e-128 462.2 312 74.7
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 5.3e-128 461.5 319 72.4
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 5.3e-128 461.5 321 71.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 6.9e-128 461.1 319 72.1
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 9.1e-128 460.7 312 74.7
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.0e-127 459.5 310 73.9
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.6e-127 459.1 318 72.0
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.6e-127 459.1 335 71.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 5.9e-127 458.0 319 72.1
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 7.7e-127 457.6 318 71.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.3e-126 456.8 319 71.2
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.7e-126 456.4 308 74.4
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.7e-126 456.4 279 79.2
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.9e-126 455.7 318 70.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 3.8e-126 455.3 308 74.0
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.1e-125 453.8 325 69.8
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 2.5e-125 452.6 316 71.2
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 7.2e-125 451.1 248 86.7
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.6e-124 449.9 318 72.0
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.7e-124 449.1 279 78.1
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.0e-123 447.2 309 71.5
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.4e-123 446.8 312 73.7
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.7e-123 444.5 316 69.6
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 6.3e-121 438.0 273 79.1
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 6.3e-121 438.0 322 68.3
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.2e-117 425.2 268 78.4
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.1e-116 422.9 260 78.1
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.6e-114 416.0 323 64.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.1e-112 410.6 309 66.3
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 5.3e-112 408.3 322 63.4
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-111 407.1 306 66.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 3.3e-106 389.0 310 65.8
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.4e-106 388.7 309 66.0
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.7e-105 386.7 309 66.3
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 9.1e-104 380.9 217 84.8
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 3.5e-103 379.0 332 59.6
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 3.2e-101 372.5 223 76.7
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 4.2e-101 372.1 232 78.0
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 2.7e-100 369.4 309 59.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.7e-100 369.4 340 55.6
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.0e-100 367.9 301 62.1
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.4e-99 367.1 301 61.8
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-88 330.5 204 79.9
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 9.2e-88 327.8 222 74.3
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.3e-86 323.2 237 65.8
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 7.3e-85 318.2 321 56.7
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 4.1e-80 302.4 208 74.0
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.5e-77 293.1 262 57.3
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.3e-77 292.7 316 51.3
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 4.3e-77 292.4 165 85.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 3.5e-71 272.7 157 85.4
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 8.9e-67 258.1 361 43.8
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 7.5e-66 255.0 171 76.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.9e-64 250.4 150 79.3
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.1e-63 246.9 171 73.1
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.1e-61 241.1 165 71.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.5e-58 230.7 132 89.4
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-57 226.5 134 79.9
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.2e-52 211.1 292 42.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-48 196.8 112 83.0
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-47 194.5 121 76.0
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-47 193.4 121 76.0
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.5e-47 193.0 121 76.0
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.5e-47 193.0 121 76.0
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-46 191.0 121 75.2
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.0e-46 189.9 116 77.6
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-46 189.5 118 76.3
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.7e-46 188.3 118 76.3
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.3e-45 186.0 296 41.9
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.3e-45 185.3 118 74.6
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-44 184.1 118 72.9
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 6.2e-44 182.2 241 48.5
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.3e-43 179.1 157 61.1
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.1e-39 167.2 93 84.9
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 6.7e-38 162.2 102 74.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.9e-37 160.6 102 73.5
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.5e-32 142.5 81 84.0
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.8e-30 137.5 136 55.9
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-30 137.5 84 77.4
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 3.7e-28 129.8 94 68.1
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.3e-25 121.3 122 52.5
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.3e-25 121.3 122 52.5
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 1.2e-23 114.8 63 87.3
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-22 111.7 64 84.4
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-22 110.9 93 61.3
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-22 110.5 64 84.4
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-21 107.1 93 61.3
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 8.2e-20 102.1 74 71.6
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-19 101.7 93 59.1
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 7.7e-18 95.5 79 60.8
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.9e-17 93.6 107 50.5
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.0e-17 92.8 50 84.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 5.0e-17 92.8 50 84.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-16 91.3 50 82.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.4e-16 91.3 50 82.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.2e-16 90.1 47 83.0
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.0e-14 85.1 226 28.8
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 1.9e-08 64.3 93 47.3


User provided reference genes

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