Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 3627.0 1866 100.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 3562.7 1858 98.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 2741.5 1888 76.7
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 2582.0 1901 73.4
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 2412.5 1375 89.2
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 2320.4 1233 95.9
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2319.7 1857 64.5
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 2290.4 1911 66.5
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2069.3 1866 58.6
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2036.2 1860 58.0
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2015.7 1865 57.4
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2013.4 1987 55.1
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2001.1 1857 57.4
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1989.5 1966 55.3
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1984.1 1857 56.3
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1979.5 1857 56.4
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1972.2 1857 56.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1963.0 1855 55.7
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1947.2 1855 55.3
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1940.6 1859 55.4
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1932.1 1878 55.0
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1925.2 1859 55.8
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1922.5 1948 54.6
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1912.9 1859 55.8
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1897.1 1860 54.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1888.2 1860 54.7
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1882.5 1863 54.4
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1882.5 1857 54.5
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1882.5 1858 54.5
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1867.8 1697 58.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1864.0 1863 53.5
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1857.8 1865 54.1
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1853.6 1848 53.5
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1851.3 1865 53.1
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1838.9 1862 53.3
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1828.5 1855 52.8
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1826.6 2004 51.8
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1822.4 1868 53.3
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1820.1 1856 53.2
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1819.7 1860 53.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1816.6 1855 52.4
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1815.0 2045 51.1
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1807.7 1856 52.6
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1807.0 1861 52.6
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1802.7 1969 51.3
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1797.3 1878 51.9
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1794.6 1862 52.5
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1790.8 1875 51.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1790.8 1859 53.0
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1788.1 1874 52.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1783.1 1859 52.1
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1781.5 1861 52.6
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1770.7 1868 51.8
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1761.9 1509 61.0
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1753.4 1895 51.6
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1739.2 1859 51.1
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1739.2 1927 50.8
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1719.5 1866 50.7
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1713.4 1708 53.2
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1705.6 1868 50.9
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1705.3 1450 61.1
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1701.0 1853 51.8
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1660.2 1729 51.8
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1657.9 1861 48.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1654.0 1860 49.2
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1648.6 1862 49.0
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1643.2 1856 48.7
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1642.9 1863 48.7
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1642.9 1863 48.7
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1642.9 1863 48.7
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1638.2 1862 49.1
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1637.9 1862 49.0
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1634.4 1855 48.6
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1614.4 1855 48.1
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1590.1 1654 52.7
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1586.6 1504 56.2
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1568.9 1863 47.6
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1527.7 1849 47.4
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1524.6 1862 46.9
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1502.6 1865 46.4
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1491.5 1696 49.1
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1464.9 1351 57.5
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1439.1 1862 44.2
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1386.3 1300 56.8
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1323.1 2065 40.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1254.6 1387 50.3
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1236.5 1188 56.6
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1222.6 1848 39.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1145.6 1857 38.7
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 8.5e-282 974.9 971 54.6
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 4.7e-264 916.0 834 56.7
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.8e-255 887.5 1036 47.4
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 1.4e-244 851.3 936 52.1
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 5.4e-228 796.2 944 47.9
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 3.0e-226 790.4 411 99.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 7.1e-220 769.2 1948 31.1
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.7e-218 764.6 644 60.4
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 4.0e-207 726.9 728 53.3
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.8e-202 711.4 642 57.6
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.4e-199 701.8 856 46.8
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.5e-190 671.8 824 46.4
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.8e-189 667.2 611 57.3
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 3.3e-177 627.5 1867 28.4
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-172 612.1 639 52.4
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.0e-165 589.3 1148 35.6
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.9e-165 587.8 794 43.7
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.6e-163 582.0 589 54.2
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.4e-156 556.2 532 55.6
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.3e-154 551.6 530 55.3
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.3e-152 545.8 272 100.0
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.9e-127 462.2 435 56.3
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 2.2e-120 438.7 430 56.0
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.4e-119 434.1 436 52.5
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 6.6e-117 427.2 638 41.1
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 5.6e-108 397.5 352 57.7
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.9e-104 384.4 346 58.1
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.4e-104 383.6 342 59.6
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.5e-102 378.3 372 53.8
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.0e-101 375.2 457 47.0
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 7.3e-100 370.5 337 55.8
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.5e-97 362.8 432 47.9
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 2.3e-93 349.0 397 52.1
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.7e-84 317.8 549 39.3
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.9e-76 292.7 621 33.2
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.4e-74 285.8 439 36.4
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 7.4e-68 264.2 266 53.4
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.3e-67 261.2 258 53.9
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 5.3e-66 258.1 208 66.8
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 9.1e-66 257.3 330 41.2
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.1e-63 250.4 225 61.8
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 1.7e-59 236.5 194 66.5
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 9.1e-58 230.7 135 88.9
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 4.4e-52 211.8 831 25.2
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.1e-50 205.7 280 45.0
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 8.0e-46 191.0 263 43.3
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-44 186.8 189 53.4
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 7.0e-42 177.9 141 64.5
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.0e-41 176.4 209 47.4
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.7e-41 176.0 226 46.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.3e-40 173.7 199 51.3
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.7e-40 173.3 147 59.2
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 7.2e-39 167.9 161 52.8
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.6e-36 159.5 127 65.4
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.3e-35 157.1 137 61.3
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.4e-34 153.7 885 23.4
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.4e-34 151.8 131 61.8
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.6e-30 140.2 224 42.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.1e-30 139.8 181 43.6
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.6e-30 139.0 134 56.7
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 4.7e-30 138.7 155 47.7
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.4e-29 137.1 179 43.0
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 4.0e-29 135.6 181 44.8
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.5e-28 131.3 145 46.9
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.9e-27 129.4 123 50.4
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 3.3e-23 115.9 84 67.9
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.5e-20 104.8 103 52.4
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.7e-19 103.6 174 37.4
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-17 97.4 101 53.5
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 6.6e-16 91.7 93 48.4
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.5e-15 89.7 107 49.5
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 2.1e-14 86.7 61 72.1
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 3.6e-14 85.9 62 56.5
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 8.1e-14 84.7 132 41.7
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.4e-10 73.9 121 34.7
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.9e-10 73.6 52 59.6
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.1e-09 70.1 86 51.2
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.5e-09 69.3 52 63.5
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.0e-08 67.8 129 41.1
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.7e-08 67.0 55 60.0
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.9e-08 65.9 52 59.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-08 65.9 42 73.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-08 65.9 42 73.8
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.5e-07 63.9 122 33.6
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 6.2e-06 58.5 109 35.8


User provided reference genes

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