Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 5.7e-164 580.9 296 100.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 2.3e-157 558.9 298 97.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 4.5e-129 464.9 294 82.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.4e-107 391.3 303 70.6
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 8.9e-101 370.9 298 69.1
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 4.0e-93 345.5 307 66.8
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 9.0e-85 317.8 277 63.2
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 6.7e-72 275.0 303 53.1
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 6.2e-70 268.5 314 50.0
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 8.1e-70 268.1 312 50.6
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.5e-63 247.3 302 47.4
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 1.9e-63 246.9 298 46.3
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 3.3e-63 246.1 310 47.4
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 6.3e-62 241.9 316 46.8
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 8.2e-62 241.5 310 45.2
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 2.4e-61 240.0 301 44.9
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 5.3e-61 238.8 312 43.9
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.5e-60 237.3 313 47.0
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.6e-60 236.5 318 43.4
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 3.4e-60 236.1 309 46.3
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.5e-60 235.7 310 44.2
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.3e-59 234.2 304 46.1
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 6.5e-59 231.9 318 44.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.5e-59 231.5 313 45.4
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 8.5e-59 231.5 313 45.4
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 8.5e-59 231.5 326 43.3
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-58 231.1 313 45.7
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 4.2e-58 229.2 310 42.9
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.2e-58 229.2 317 42.6
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 4.6e-57 225.7 296 46.3
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.3e-56 224.2 306 42.2
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.3e-56 224.2 292 45.2
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.8e-56 223.8 297 44.1
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.8e-56 223.8 336 42.9
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 3.0e-56 223.0 294 43.9
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 5.1e-56 222.2 294 44.9
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 5.7e-55 218.8 303 42.9
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 9.7e-55 218.0 297 44.4
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.6e-54 217.2 304 42.8
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 2.8e-54 216.5 296 42.6
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 6.3e-54 215.3 316 41.5
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.3e-54 215.3 316 41.5
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 6.3e-54 215.3 301 41.9
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.1e-53 214.5 311 43.7
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.8e-53 213.8 299 42.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.8e-53 213.8 299 46.5
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 3.1e-53 213.0 302 43.4
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.1e-53 213.0 316 41.1
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.5e-52 210.7 314 44.3
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 4.5e-52 209.1 307 41.7
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.9e-52 208.8 307 40.7
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 7.7e-52 208.4 312 42.0
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.0e-51 208.0 293 42.0
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 3.8e-51 206.1 306 41.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.2e-50 203.0 318 39.6
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 3.2e-50 203.0 277 43.0
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 5.5e-50 202.2 288 43.4
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.6e-49 200.7 304 41.4
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 2.1e-49 200.3 304 41.8
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 2.1e-49 200.3 299 43.1
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 4.6e-49 199.1 304 41.8
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 4.6e-49 199.1 305 41.0
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.9e-49 198.4 320 39.7
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.0e-48 198.0 300 41.0
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.8e-48 197.2 337 37.7
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 3.9e-48 196.1 310 42.9
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 3.9e-48 196.1 300 40.3
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 5.1e-48 195.7 307 40.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 5.1e-48 195.7 300 41.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 6.7e-48 195.3 372 35.8
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 6.7e-48 195.3 291 43.0
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 6.7e-48 195.3 311 40.2
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 6.7e-48 195.3 302 40.4
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 6.7e-48 195.3 363 37.7
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 6.7e-48 195.3 332 36.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.6e-47 193.4 311 39.5
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 3.3e-47 193.0 300 40.0
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.4e-47 192.6 316 38.9
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 4.4e-47 192.6 311 41.5
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 7.4e-47 191.8 329 37.4
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.3e-46 191.0 295 41.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.3e-46 191.0 295 41.4
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 1.3e-46 191.0 295 41.4
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.7e-46 190.7 304 39.1
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 4.8e-46 189.1 299 41.1
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.4e-45 186.8 325 39.4
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 3.1e-45 186.4 354 36.2
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 4.1e-45 186.0 319 37.3
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.3e-45 185.7 316 42.7
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 6.9e-45 185.3 293 41.6
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.0e-44 183.7 293 40.6
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 7.7e-44 181.8 349 35.2
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.0e-43 181.4 312 39.4
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.7e-43 180.6 289 40.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.5e-43 178.7 310 38.7
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.1e-42 177.9 311 37.6
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.4e-42 177.6 329 37.1
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.5e-42 176.8 298 39.6
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.6e-41 174.1 304 37.2
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.1e-41 173.7 316 38.3
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 3.9e-40 169.5 402 32.6
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 9.7e-39 164.9 297 38.7
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 4.1e-37 159.5 304 36.5
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 1.6e-36 157.5 284 35.2
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 4.5e-36 156.0 293 38.2
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.9e-36 155.6 315 36.8
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.7e-35 154.1 302 33.4
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-34 151.0 228 39.9
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 5.5e-34 149.1 299 38.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 8.0e-33 145.2 217 39.6
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.4e-32 144.4 321 33.0
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.8e-30 136.7 224 38.8
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 7.7e-28 128.6 299 32.4
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.8e-27 126.3 212 42.5
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 5.0e-27 125.9 235 39.1
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.5e-26 124.4 317 34.1
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 3.2e-26 123.2 128 50.0
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 5.5e-26 122.5 220 41.4
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 5.7e-23 112.5 206 37.4
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.7e-22 110.9 93 55.9
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.9e-19 100.1 222 32.9
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 8.6e-19 98.6 225 30.7
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.9e-18 97.4 254 29.9
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 5.5e-18 95.9 347 26.5
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 4.7e-17 92.8 290 26.6
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 8.8e-16 88.6 135 37.8
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.0e-15 87.4 218 31.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.0e-15 87.4 89 48.3
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.8e-14 83.6 118 42.4
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 4.9e-14 82.8 244 29.1
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 4.9e-14 82.8 343 26.2
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.8e-13 80.9 70 57.1
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 9.2e-13 78.6 315 27.0
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.2e-12 78.2 126 34.9
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.0e-11 75.1 126 39.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.6e-11 72.0 208 29.3
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.3e-10 69.7 258 26.0
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 4.3e-10 69.7 101 36.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.6e-09 67.8 315 25.7
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-09 67.4 146 33.6
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.6e-09 66.6 55 63.6
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 1.3e-06 58.2 81 37.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.3e-06 58.2 95 31.6


User provided reference genes

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