Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 6.1e-48 196.1 461 100.0
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.8e-47 194.5 461 99.8
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.4e-46 190.3 461 98.9
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.5e-33 147.5 82 91.5
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.3e-29 135.2 459 93.2
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.2e-28 130.6 458 92.6
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 3.2e-28 130.6 458 92.6
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 4.6e-27 126.7 82 78.0
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 9.5e-25 119.0 80 75.0
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.1e-24 117.9 85 70.6
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 8.1e-24 115.9 84 65.5
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.8e-23 114.8 61 86.9
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.2e-22 112.1 80 66.2
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.5e-22 111.7 80 72.5
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.2e-21 107.8 65 78.5
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 2.9e-21 107.5 73 71.2
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 4.9e-21 106.7 83 59.0
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 6.4e-21 106.3 84 60.7
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 6.4e-21 106.3 68 69.1
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 8.3e-21 105.9 82 65.9
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.1e-20 105.5 76 72.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.1e-20 105.5 81 63.0
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.1e-20 105.5 80 65.0
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.9e-20 104.8 68 69.1
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.9e-20 104.8 68 73.5
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 3.2e-20 104.0 84 60.7
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 3.2e-20 104.0 82 61.0
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 4.1e-20 103.6 66 72.7
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 4.1e-20 103.6 83 59.0
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.1e-20 103.6 68 73.5
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 4.1e-20 103.6 83 61.4
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 4.1e-20 103.6 68 67.6
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 5.4e-20 103.2 68 73.5
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 9.2e-20 102.4 66 65.2
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.2e-19 102.1 68 64.7
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.6e-19 101.7 68 64.7
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 2.7e-19 100.9 75 65.3
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.7e-19 100.9 74 60.8
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 3.5e-19 100.5 84 54.8
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.6e-19 100.1 68 72.1
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 4.6e-19 100.1 68 72.1
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 4.6e-19 100.1 80 60.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 7.8e-19 99.4 66 66.7
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 7.8e-19 99.4 84 56.0
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 7.8e-19 99.4 67 68.7
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.0e-18 99.0 66 63.6
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.0e-18 99.0 67 61.2
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.0e-18 99.0 66 68.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 1.3e-18 98.6 65 64.6
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.7e-18 98.2 81 56.8
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.7e-18 98.2 68 63.2
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 2.3e-18 97.8 71 64.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 2.3e-18 97.8 67 64.2
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.3e-18 97.8 65 66.2
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.9e-18 97.1 78 57.7
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.6e-18 96.3 68 61.8
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 6.6e-18 96.3 67 61.2
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 8.6e-18 95.9 82 53.7
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.5e-17 95.1 71 60.6
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.9e-17 94.7 80 53.8
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.9e-17 94.7 68 60.3
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 3.3e-17 94.0 63 65.1
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 3.3e-17 94.0 81 54.3
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 4.3e-17 93.6 78 59.0
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 5.6e-17 93.2 68 61.8
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 7.3e-17 92.8 61 59.0
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 7.3e-17 92.8 67 62.7
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 9.5e-17 92.4 81 49.4
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 86 48.8
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.6e-16 91.7 80 52.5
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 2.1e-16 91.3 79 55.7
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 2.8e-16 90.9 68 55.9
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 2.8e-16 90.9 68 55.9
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 2.8e-16 90.9 82 52.4
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 3.6e-16 90.5 67 59.7
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 3.6e-16 90.5 68 57.4
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 3.6e-16 90.5 68 57.4
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 3.6e-16 90.5 67 55.2
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.7e-16 90.1 68 66.2
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 6.2e-16 89.7 65 61.5
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 8.1e-16 89.4 68 54.4
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.1e-15 89.0 77 50.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.4e-15 88.6 67 56.7
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.4e-15 88.6 68 58.8
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 1.4e-15 88.6 77 54.5
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.8e-15 88.2 77 53.2
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.4e-15 87.8 79 54.4
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 3.1e-15 87.4 67 55.2
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 3.1e-15 87.4 55 67.3
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.0e-15 87.0 79 51.9
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 4.0e-15 87.0 67 55.2
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 4.0e-15 87.0 81 48.1
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 6.8e-15 86.3 82 46.3
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.9e-15 85.9 68 54.4
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.0e-14 84.7 71 57.7
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.6e-14 84.3 72 56.9
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 2.6e-14 84.3 81 45.7
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 7.6e-14 82.8 68 51.5
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 2.2e-13 81.3 49 75.5
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.2e-13 81.3 68 50.0
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 3.8e-13 80.5 46 84.8
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 8.4e-13 79.3 77 48.1
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.4e-12 77.8 61 54.1
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 7.1e-12 76.3 80 47.5
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.6e-11 75.1 82 45.1
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.0e-11 73.2 80 51.2
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 7.8e-11 72.8 48 68.8
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 7.8e-11 72.8 48 68.8
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 7.8e-11 72.8 48 68.8
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 7.8e-11 72.8 48 68.8
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 7.8e-11 72.8 79 45.6
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 7.8e-11 72.8 48 70.8
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.0e-10 72.4 51 64.7
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.0e-10 72.4 51 64.7
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.0e-10 72.4 48 66.7
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.3e-10 72.0 46 71.7
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 1.3e-10 72.0 46 71.7
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.3e-10 72.0 78 44.9
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 3.9e-10 70.5 46 71.7
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 6.6e-10 69.7 49 65.3
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 6.6e-10 69.7 75 46.7
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 8.7e-10 69.3 44 68.2
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.5e-09 68.6 46 67.4
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 1.5e-09 68.6 70 47.1
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.5e-09 67.8 45 64.4
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 5.6e-09 66.6 50 58.0
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 1.8e-07 61.6 45 62.2
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 2.6e-06 57.8 39 66.7
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 9.9e-06 55.8 44 59.1


User provided reference genes

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