Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.7e-121 438.7 229 100.0
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 4.2e-114 414.8 229 96.1
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 9.3e-106 387.1 228 90.4
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.7e-99 366.3 232 85.8
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 6.7e-72 274.6 173 85.0
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.4e-64 250.4 181 76.8
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.8e-64 250.0 237 63.3
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.6e-60 236.9 223 59.6
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 5.2e-56 221.9 214 64.0
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 7.0e-53 211.5 215 60.0
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.2e-52 210.7 234 60.3
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 4.5e-52 208.8 132 85.6
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 3.8e-51 205.7 235 57.9
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.1e-50 204.1 234 56.8
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.1e-50 204.1 234 56.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.9e-50 203.4 200 58.5
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.3e-48 196.4 236 56.4
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 4.0e-48 195.7 236 55.1
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.5e-47 193.7 220 56.4
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 5.7e-47 191.8 234 56.4
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.9e-46 188.7 236 54.7
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.7e-44 183.0 232 53.4
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.0e-43 181.0 218 50.5
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.6e-43 178.3 216 52.8
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 8.6e-43 177.9 221 50.7
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 2.1e-41 173.3 219 53.4
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.8e-41 172.9 239 51.5
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 3.6e-41 172.6 241 51.9
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 6.1e-41 171.8 241 51.0
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 8.0e-41 171.4 240 53.8
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.0e-40 171.0 238 50.8
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.3e-40 169.9 231 52.4
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 7.5e-39 164.9 227 50.7
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 9.8e-39 164.5 237 51.9
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 2.2e-38 163.3 236 50.8
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.7e-38 162.5 233 49.4
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 6.4e-38 161.8 224 50.9
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.2e-37 159.5 220 51.4
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.1e-37 159.1 187 56.7
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 4.1e-37 159.1 235 47.7
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 5.4e-37 158.7 230 50.9
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 7.0e-37 158.3 238 50.4
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 9.2e-37 157.9 251 46.2
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.6e-36 157.1 180 53.3
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.7e-36 156.4 236 50.4
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 3.5e-36 156.0 222 50.5
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.5e-36 156.0 251 46.2
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.6e-36 155.6 216 48.1
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 6.0e-36 155.2 217 49.3
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.0e-35 154.5 203 53.7
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.0e-35 152.9 219 48.9
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 6.6e-35 151.8 186 57.5
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.5e-34 150.6 227 46.7
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.5e-34 150.6 218 49.1
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 2.5e-34 149.8 189 56.1
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 3.3e-34 149.4 215 51.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 4.3e-34 149.1 225 48.0
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 9.5e-34 147.9 92 82.6
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.8e-33 146.4 222 46.8
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 6.2e-33 145.2 235 48.1
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.2e-33 145.2 200 50.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.0e-33 144.8 236 47.0
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 1.3e-30 137.5 235 46.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 2.9e-30 136.3 197 49.7
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 6.4e-30 135.2 224 46.9
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.4e-29 134.0 190 51.1
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 5.4e-29 132.1 220 46.4
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.2e-28 131.0 239 46.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.6e-28 130.6 268 39.9
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.6e-28 130.6 238 44.1
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.1e-28 130.2 165 52.7
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.7e-27 127.1 190 51.6
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 3.9e-27 125.9 226 45.6
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 5.1e-27 125.6 246 41.1
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 6.6e-27 125.2 237 43.5
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.1e-26 124.4 191 47.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-26 124.0 242 44.2
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.5e-26 123.2 245 43.7
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 7.3e-26 121.7 242 40.1
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 7.3e-26 121.7 242 40.1
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 7.3e-26 121.7 249 39.4
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.6e-25 120.6 241 40.2
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-25 120.2 245 42.4
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-25 120.2 245 42.4
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.8e-25 119.8 242 39.7
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.1e-24 117.9 247 41.7
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.1e-24 117.9 187 46.0
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-24 117.5 255 36.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.8e-24 117.1 246 38.6
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.3e-24 116.7 302 34.8
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.3e-24 116.7 240 40.0
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.3e-24 116.7 195 44.1
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 4.0e-24 115.9 250 36.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 6.8e-24 115.2 236 39.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.8e-24 115.2 306 34.6
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 8.9e-24 114.8 189 43.4
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 8.9e-24 114.8 128 57.8
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.2e-23 114.4 246 37.4
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.6e-23 113.2 251 38.6
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.6e-23 113.2 240 38.8
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.4e-23 112.8 229 39.7
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 7.6e-23 111.7 251 36.3
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 9.9e-23 111.3 121 61.2
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.9e-23 111.3 243 41.6
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.3e-22 110.9 249 38.6
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.3e-22 110.9 217 41.0
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 2.2e-22 110.2 196 42.3
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 2.9e-22 109.8 245 38.8
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 6.4e-22 108.6 163 46.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.9e-21 107.1 231 36.8
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.2e-21 106.3 233 36.1
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.2e-21 106.3 182 44.5
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.2e-21 106.3 182 45.6
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.2e-21 106.3 259 37.1
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.1e-21 105.1 181 45.3
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-20 104.0 219 41.6
CAN.G1425.14 Capsicum annuum HOM05D004795 ORTHO05D005518 2.7e-20 103.2 66 81.8
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-20 103.2 219 42.0
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 4.6e-20 102.4 233 38.6
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 4.6e-20 102.4 220 38.6
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 4.6e-20 102.4 278 36.0
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 6.0e-20 102.1 231 39.4
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 6.0e-20 102.1 237 35.9
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 6.0e-20 102.1 190 41.6
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.0e-19 101.3 257 36.2
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.0e-19 99.8 266 35.3
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 5.1e-19 99.0 194 44.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 8.6e-19 98.2 272 34.6
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 8.6e-19 98.2 180 41.7
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.1e-18 97.8 194 40.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.5e-18 97.4 182 41.8
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.4e-16 90.9 222 37.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.8e-16 90.5 168 42.9
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 3.1e-16 89.7 158 44.3
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 4.0e-16 89.4 271 34.7
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.2e-15 87.8 258 34.5
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.4e-15 85.9 290 32.4
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.4e-15 85.9 137 47.4
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.4e-15 85.9 137 47.4
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 9.9e-15 84.7 124 48.4
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.3e-14 84.3 88 59.1
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-14 84.0 212 34.9
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.7e-14 84.0 153 41.2
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 2.9e-14 83.2 181 38.1
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 6.4e-14 82.0 165 38.8
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 1.1e-13 81.3 330 30.0
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 5.4e-13 79.0 187 35.8
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 2.1e-12 77.0 160 37.5
CAN.G358.89 Capsicum annuum HOM05D004795 ORTHO05D005518 3.0e-11 73.2 61 67.2
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.6e-10 68.9 107 46.7
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 5.6e-10 68.9 129 41.1
SalBow3G3444 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.4e-08 64.3 64 57.8
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.8e-08 63.9 124 45.2


User provided reference genes

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