Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 5.6e-209 730.7 374 100.0
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 4.1e-175 618.2 342 93.0
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 1.7e-152 543.1 374 74.9
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 2.8e-152 542.3 355 79.4
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 2.6e-150 535.8 377 73.5
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 3.5e-150 535.4 378 72.8
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 7.7e-150 534.3 378 72.5
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 7.7e-150 534.3 378 73.3
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.3e-149 533.5 377 73.2
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 1.3e-149 533.5 377 73.2
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 1.7e-149 533.1 377 72.7
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 2.9e-149 532.3 377 73.5
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 2.5e-148 529.3 376 72.9
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 2.5e-148 529.3 375 72.8
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 2.5e-148 529.3 378 72.0
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 9.4e-148 527.3 377 73.7
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 1.6e-147 526.6 378 73.8
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 2.3e-146 522.7 378 72.2
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 5.2e-146 521.5 378 70.1
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 5.2e-146 521.5 377 72.1
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 8.8e-146 520.8 378 71.2
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 2.0e-145 519.6 378 70.1
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.0e-145 519.6 378 70.1
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 3.3e-145 518.8 378 69.8
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 7.5e-145 517.7 378 70.6
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 2.2e-144 516.2 379 70.4
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 2.8e-144 515.8 378 71.2
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.1e-143 513.8 338 80.8
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.4e-143 513.5 338 80.2
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 2.4e-143 512.7 375 71.7
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 7.0e-143 511.1 378 70.6
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 9.1e-143 510.8 379 71.2
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 7.7e-142 507.7 378 68.8
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.0e-141 507.3 411 64.5
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 3.2e-140 502.3 377 69.0
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 7.2e-140 501.1 378 68.5
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 7.2e-140 501.1 380 67.9
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 1.2e-139 500.4 378 69.8
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 1.6e-139 500.0 378 68.0
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 4.7e-139 498.4 376 67.8
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 1.4e-138 496.9 376 68.4
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 1.4e-138 496.9 378 68.3
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 4.0e-138 495.4 378 69.0
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 5.2e-138 495.0 342 71.1
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 6.8e-138 494.6 376 68.4
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 6.8e-138 494.6 378 68.0
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 6.8e-138 494.6 381 67.7
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 8.8e-138 494.2 375 67.5
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 1.5e-137 493.4 377 67.6
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 1.5e-137 493.4 376 67.6
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 1.5e-137 493.4 376 67.6
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 2.0e-137 493.0 377 67.6
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 2.6e-137 492.7 376 67.6
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 2.6e-137 492.7 380 67.1
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 3.4e-137 492.3 376 67.3
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 5.7e-137 491.5 376 66.8
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 7.5e-137 491.1 376 66.8
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 9.8e-137 490.7 371 69.5
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 1.7e-136 490.0 376 67.0
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 1.8e-135 486.5 376 66.0
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 5.4e-135 485.0 380 67.4
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 5.4e-135 485.0 408 65.0
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 1.7e-133 479.9 373 67.0
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 6.6e-133 478.0 370 65.7
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 1.1e-132 477.2 364 67.3
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 4.0e-130 468.8 377 65.0
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 2.6e-129 466.1 377 63.4
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 9.2e-127 457.6 309 75.4
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 1.0e-122 444.1 376 62.8
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 3.4e-121 439.1 363 60.1
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 2.2e-120 436.4 377 59.4
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 5.4e-119 431.8 361 60.7
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 9.2e-119 431.0 377 62.1
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 1.2e-118 430.6 359 60.4
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 7.3e-116 421.4 373 59.8
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 1.5e-113 413.7 400 59.0
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 9.2e-111 404.4 389 55.0
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 4.7e-107 392.1 429 53.4
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 6.4e-104 381.7 400 56.2
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 1.1e-103 380.9 358 59.2
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 2.4e-103 379.8 325 60.0
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 2.4e-103 379.8 268 73.9
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 2.1e-99 366.7 396 52.0
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 5.2e-98 362.1 386 54.7
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 3.2e-95 352.8 397 53.9
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 5.6e-92 342.0 371 50.1
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 2.8e-91 339.7 383 54.0
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 5.8e-89 332.0 279 63.4
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 6.4e-88 328.6 191 91.1
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 2.1e-83 313.5 335 47.8
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 9.0e-82 308.1 194 87.6
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 3.8e-80 302.8 308 56.2
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 3.1e-74 283.1 265 55.8
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 2.0e-73 280.4 192 73.4
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 5.8e-73 278.9 172 83.1
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 1.7e-72 277.3 175 78.9
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 1.4e-71 274.2 141 95.7
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 3.2e-71 273.1 171 74.9
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 6.9e-66 255.4 175 74.9
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.5e-65 254.2 175 74.9
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 7.6e-65 251.9 174 69.5
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 6.3e-59 232.3 167 67.7
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 6.9e-58 228.8 326 40.5
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.7e-56 224.2 259 49.0
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 2.1e-54 217.2 174 64.9
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 6.1e-54 215.7 108 94.4
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 3.4e-49 199.9 123 76.4
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 1.6e-46 191.0 228 49.6
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 1.2e-41 174.9 127 67.7
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 1.4e-39 167.9 112 68.8
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 1.2e-38 164.9 118 66.1
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 1.6e-38 164.5 97 81.4
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 3.7e-35 153.3 352 31.8
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 6.3e-35 152.5 140 57.9
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 1.1e-34 151.8 94 72.3
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 2.4e-34 150.6 123 59.3
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 1.9e-31 141.0 148 53.4
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 5.5e-31 139.4 100 64.0
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 1.3e-27 128.3 102 61.8
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 2.0e-25 120.9 75 70.7
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 2.0e-25 120.9 101 60.4
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 3.2e-23 113.6 82 69.5
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.7e-22 110.5 79 73.4
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 4.0e-21 106.7 67 74.6
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 8.8e-21 105.5 123 42.3
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 4.1e-18 96.7 72 66.7
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 5.4e-18 96.3 247 28.7
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 1.7e-16 91.3 115 49.6
BraA04t16950Z Brassica rapa HOM05D006555 ORTHO05D008376 6.1e-14 82.8 253 30.4
A04p12870 Brassica napus HOM05D006555 ORTHO05D008376 8.0e-14 82.4 253 30.0
C04p46570 Brassica napus HOM05D006555 ORTHO05D008376 8.0e-14 82.4 324 27.8
BcaB06g27415 Brassica carinata HOM05D006555 ORTHO05D008376 1.4e-13 81.6 255 29.8
CiPaw.03G033500 Carya illinoinensis HOM05D006555 ORTHO05D008376 1.4e-13 81.6 270 26.7
BolC4t26243H Brassica oleracea HOM05D006555 ORTHO05D008376 1.8e-13 81.3 253 29.6
Carub.0003s2623 Capsella rubella HOM05D006555 ORTHO05D008376 1.2e-12 78.6 368 24.7
CARHR102570 Cardamine hirsuta HOM05D006555 ORTHO05D008376 9.8e-12 75.5 289 26.6
AT2G04620 Arabidopsis thaliana HOM05D006555 ORTHO05D008376 1.7e-11 74.7 275 26.2
Thhalv10027647m.g Eutrema salsugineum HOM05D006555 ORTHO05D008376 2.2e-11 74.3 277 26.0
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 2.8e-11 73.9 334 25.1
Sp7g02000 Schrenkiella parvula HOM05D006555 ORTHO05D008376 3.7e-11 73.6 256 28.5
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 8.3e-11 72.4 297 24.6
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 4.1e-10 70.1 257 25.7
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 5.4e-10 69.7 366 23.5
PSO013G0385 Papaver somniferum HOM05D006555 ORTHO05D008376 9.2e-10 68.9 330 25.2
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 2.0e-09 67.8 357 23.0
Haze_14619 Corylus avellana HOM05D006555 ORTHO05D008376 5.9e-09 66.2 266 25.6
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 7.8e-09 65.9 320 23.8
PSO832G4179 Papaver somniferum HOM05D006555 ORTHO05D008376 7.8e-09 65.9 330 24.8
Psat1g109920 Pisum sativum HOM05D006555 ORTHO05D008376 6.6e-08 62.8 361 22.4
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 6.6e-08 62.8 134 31.3
Thecc.04G067100 Theobroma cacao HOM05D006555 ORTHO05D008376 6.6e-08 62.8 330 23.6
THA.LOC104800651 Tarenaya hassleriana HOM05D006555 ORTHO05D008376 1.1e-07 62.0 262 24.8
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 1.9e-07 61.2 333 23.1
AL3G42250 Arabidopsis lyrata HOM05D006555 ORTHO05D008376 2.5e-07 60.8 239 26.4
AUR62028128 Chenopodium quinoa HOM05D006555 ORTHO05D008376 5.6e-07 59.7 266 24.8
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 7.3e-07 59.3 259 24.7
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 9.5e-07 58.9 348 23.9
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.2e-06 58.5 52 59.6
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 1.2e-06 58.5 259 24.7
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 1.6e-06 58.2 244 24.6
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 4.7e-06 56.6 250 24.4
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 4.7e-06 56.6 250 24.4


User provided reference genes

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