Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.0e-138 495.7 250 100.0
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.0e-131 470.7 250 94.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.6e-130 469.5 251 95.2
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.3e-110 402.5 278 78.1
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 4.6e-90 335.1 251 68.9
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-88 330.5 243 70.8
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-87 326.6 251 70.1
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-85 320.5 235 70.2
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.9e-85 317.4 235 70.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.8e-84 315.5 242 70.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.5e-82 308.9 258 65.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 6.0e-82 308.1 238 67.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.1e-80 303.9 238 66.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 9.0e-78 294.3 230 63.9
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.5e-77 293.5 241 62.7
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 7.6e-77 291.2 198 74.2
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.7e-76 290.0 241 63.1
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.9e-76 288.5 237 65.0
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.4e-76 287.7 231 68.8
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.1e-75 287.3 234 66.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.2e-75 285.4 251 61.4
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.6e-74 283.5 243 64.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.0e-73 280.8 251 61.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.8e-73 280.0 243 58.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.1e-73 278.5 242 61.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.5e-72 276.9 184 73.9
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.5e-72 276.2 234 62.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.3e-72 275.4 207 66.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 7.4e-72 274.6 187 73.3
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 7.4e-72 274.6 187 73.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 9.6e-72 274.2 200 67.5
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.1e-71 273.1 237 61.6
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.1e-71 273.1 187 72.7
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.8e-71 272.7 214 65.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 6.2e-71 271.6 212 66.5
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.1e-71 271.2 170 84.1
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 8.1e-71 271.2 203 69.0
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.1e-70 270.8 247 58.7
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.0e-70 268.9 242 57.4
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.3e-70 268.5 241 61.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 6.9e-70 268.1 242 58.3
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 2.0e-69 266.5 222 63.1
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.6e-69 266.2 199 67.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.4e-69 265.8 247 56.7
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 3.4e-69 265.8 244 57.4
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.5e-69 265.4 228 61.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 7.6e-69 264.6 251 57.8
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 9.9e-69 264.2 182 72.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.8e-68 262.3 237 57.4
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 6.4e-68 261.5 237 57.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 6.4e-68 261.5 247 59.1
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 6.4e-68 261.5 244 59.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 8.4e-68 261.2 187 70.6
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-67 260.8 246 58.1
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.9e-67 260.0 241 56.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.9e-67 260.0 241 56.4
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.4e-67 259.6 181 70.7
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.4e-67 259.6 238 56.7
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 4.2e-67 258.8 213 59.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.2e-67 258.8 245 58.0
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 9.3e-67 257.7 179 71.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 9.3e-67 257.7 244 57.0
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 9.3e-67 257.7 187 69.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 9.3e-67 257.7 227 59.9
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-66 257.3 244 58.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.7e-66 256.1 240 58.3
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.5e-66 255.8 219 61.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.5e-66 255.8 219 61.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 4.6e-66 255.4 216 60.6
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.0e-66 255.0 242 57.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 7.9e-66 254.6 205 62.4
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.8e-65 253.4 183 67.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.8e-65 253.4 183 67.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.3e-65 253.1 224 58.0
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 2.3e-65 253.1 183 67.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.3e-65 253.1 208 61.5
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 3.0e-65 252.7 187 67.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.0e-65 252.7 241 60.2
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 8.7e-65 251.1 245 55.1
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 8.7e-65 251.1 237 59.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.5e-64 250.4 180 68.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.9e-64 250.0 244 54.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 3.3e-64 249.2 243 54.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.6e-64 248.4 150 80.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 5.6e-64 248.4 243 53.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 7.4e-64 248.1 241 55.6
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.4e-64 248.1 207 62.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 9.6e-64 247.7 150 79.3
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.6e-64 247.7 242 55.4
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.6e-63 246.9 207 59.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.7e-63 245.7 244 57.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 6.2e-63 245.0 255 54.9
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 8.1e-63 244.6 207 59.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.8e-62 243.4 240 52.5
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.8e-62 243.4 196 61.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.4e-62 243.0 234 56.4
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 3.1e-62 242.7 242 52.1
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.0e-62 242.3 225 60.0
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.9e-62 241.5 237 56.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.9e-62 241.5 150 78.7
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.0e-62 241.1 242 54.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.0e-61 240.0 240 53.3
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.0e-61 240.0 243 53.5
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.0e-61 240.0 175 66.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.4e-61 239.2 143 79.7
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 3.4e-61 239.2 245 53.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 5.8e-61 238.4 234 52.6
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.3e-60 237.3 247 51.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.2e-60 236.5 197 59.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.9e-60 236.1 147 74.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.8e-60 235.7 218 58.7
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.9e-59 233.4 137 81.0
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.9e-59 233.4 179 62.6
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.5e-59 233.0 227 58.1
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 7.1e-59 231.5 165 70.3
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 9.3e-59 231.1 195 57.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.2e-58 230.7 154 71.4
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.2e-58 230.7 157 69.4
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.0e-57 227.6 173 64.7
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.1e-54 217.6 202 54.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 5.3e-54 215.3 182 62.6
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 9.0e-54 214.5 148 68.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.1e-50 203.4 202 58.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.7e-50 203.0 202 58.9
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.1e-50 201.8 182 56.6
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.3e-49 199.9 119 79.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.3e-48 195.7 152 63.8
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.6e-45 186.4 199 49.7
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.4e-45 186.0 141 61.0
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 3.4e-45 186.0 196 52.6
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 7.7e-45 184.9 149 57.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.3e-44 184.1 139 63.3
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.9e-43 180.3 201 52.7
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.2e-43 179.5 226 45.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 7.2e-43 178.3 139 56.1
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 6.7e-41 171.8 238 45.8
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 8.8e-41 171.4 137 64.2
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.3e-38 162.2 134 61.9
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 6.9e-38 161.8 126 69.0
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 5.5e-35 152.1 206 42.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.2e-35 151.8 150 57.3
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.9e-29 132.1 156 48.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.1e-26 122.1 174 47.1
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.3e-24 116.3 161 45.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-21 107.8 138 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.6e-21 107.5 79 62.0
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 5.2e-17 92.4 179 33.5
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-16 91.3 131 37.4
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-15 86.7 97 47.4
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 9.1e-14 81.6 152 32.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.6e-13 80.9 131 37.4
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 5.0e-12 75.9 162 30.9
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.2e-11 72.0 128 31.2
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-10 70.9 82 52.4
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 5.2e-09 65.9 83 47.0
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.4e-08 63.2 124 29.0


User provided reference genes

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