Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030700 Solanum pennellii HOM05D000286 ORTHO05D000170 8.3e-47 189.9 87 100.0
PGSC0003DMG402026407 Solanum tuberosum HOM05D000286 ORTHO05D000170 1.7e-12 75.9 65 61.5
CAN.G625.23 Capsicum annuum HOM05D000286 ORTHO05D000170 1.5e-11 72.8 63 66.7
Peaxi162Scf00394g00524 Petunia axillaris HOM05D000286 ORTHO05D000170 1.5e-11 72.8 63 66.7
Solyc02g086040.2 Solanum lycopersicum HOM05D000286 ORTHO05D000170 2.5e-11 72.0 63 63.5
Sopen02g030730 Solanum pennellii HOM05D000286 ORTHO05D000170 2.5e-11 72.0 63 63.5
Dinv33945 Davidia involucrata HOM05D000286 ORTHO05D000170 3.3e-11 71.6 63 61.9
Lj2C442G13 Lonicera japonica HOM05D000286 ORTHO05D000170 4.3e-11 71.2 63 61.9
Sopen02g014230 Solanum pennellii HOM05D000286 ORTHO05D000170 1.6e-10 69.3 63 61.9
CAN.G225.3 Capsicum annuum HOM05D000286 ORTHO05D000170 2.8e-10 68.6 63 60.3
Peaxi162Scf00394g00523 Petunia axillaris HOM05D000286 ORTHO05D000170 2.8e-10 68.6 63 63.5
AUR62023303 Chenopodium quinoa HOM05D000286 ORTHO05D000170 3.6e-10 68.2 84 50.0
Nitab4.5_0000659g0040 Nicotiana tabacum HOM05D000286 ORTHO05D000170 4.8e-10 67.8 63 63.5
Nitab4.5_0000912g0230 Nicotiana tabacum HOM05D000286 ORTHO05D000170 4.8e-10 67.8 63 63.5
Peaxi162Scf00501g00317 Petunia axillaris HOM05D000286 ORTHO05D000170 4.8e-10 67.8 63 58.7
Ca_13732_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 8.1e-10 67.0 77 54.5
Lalb_Chr02g0158201 Lupinus albus HOM05D000286 ORTHO05D000170 8.1e-10 67.0 63 58.7
Psat1g080640 Pisum sativum HOM05D000286 ORTHO05D000170 8.1e-10 67.0 63 61.9
FvH4_3g25850 Fragaria vesca HOM05D000286 ORTHO05D000170 1.1e-09 66.6 63 58.7
Medtr6g018490 Medicago truncatula HOM05D000286 ORTHO05D000170 1.1e-09 66.6 63 60.3
Medtr6g025610 Medicago truncatula HOM05D000286 ORTHO05D000170 1.1e-09 66.6 63 60.3
Nitab4.5_0004398g0070 Nicotiana tabacum HOM05D000286 ORTHO05D000170 1.1e-09 66.6 63 61.9
Oeu036859.2 Olea europaea HOM05D000286 ORTHO05D000170 1.4e-09 66.2 57 66.7
RcHm_v2.0_Chr5g0047101 Rosa chinensis HOM05D000286 ORTHO05D000170 1.4e-09 66.2 68 57.4
Prupe.3G157400 Prunus persica HOM05D000286 ORTHO05D000170 1.8e-09 65.9 63 60.3
Sc10g0001170 Simmondsia chinensis HOM05D000286 ORTHO05D000170 1.8e-09 65.9 63 58.7
Ciclev10012092m.g Citrus clementina HOM05D000286 ORTHO05D000170 2.4e-09 65.5 63 60.3
Glyma.13G046000 Glycine max HOM05D000286 ORTHO05D000170 3.1e-09 65.1 63 60.3
Glyma.19G047400 Glycine max HOM05D000286 ORTHO05D000170 3.1e-09 65.1 63 60.3
DCAR_025915 Daucus carota HOM05D000286 ORTHO05D000170 4.0e-09 64.7 101 44.6
Nitab4.5_0001217g0020 Nicotiana tabacum HOM05D000286 ORTHO05D000170 4.0e-09 64.7 63 60.3
Sed0024956 Sechium edule HOM05D000286 ORTHO05D000170 4.0e-09 64.7 63 57.1
Solyc02g063160.4 Solanum lycopersicum HOM05D000286 ORTHO05D000170 4.0e-09 64.7 63 60.3
Solyc02g063200.3 Solanum lycopersicum HOM05D000286 ORTHO05D000170 4.0e-09 64.7 63 60.3
Sopen02g014270 Solanum pennellii HOM05D000286 ORTHO05D000170 4.0e-09 64.7 63 60.3
PGSC0003DMG400010417 Solanum tuberosum HOM05D000286 ORTHO05D000170 4.0e-09 64.7 63 60.3
PSO478G2988 Papaver somniferum HOM05D000286 ORTHO05D000170 5.3e-09 64.3 63 58.7
Phvul.004G066000 Phaseolus vulgaris HOM05D000286 ORTHO05D000170 5.3e-09 64.3 63 58.7
TWI77G0146 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 5.3e-09 64.3 63 57.1
Potri.017G114800 Populus trichocarpa HOM05D000286 ORTHO05D000170 6.9e-09 63.9 63 58.7
Hund16157 Selenicereus undatus HOM05D000286 ORTHO05D000170 9.0e-09 63.5 60 60.0
Actinidia36319 Actinidia chinensis HOM05D000286 ORTHO05D000170 1.2e-08 63.2 63 57.1
ATR1125G115 Amborella trichopoda HOM05D000286 ORTHO05D000170 1.2e-08 63.2 63 54.0
HanXRQChr14g0438461 Helianthus annuus HOM05D000286 ORTHO05D000170 1.2e-08 63.2 63 57.1
Lj4A191G50 Lonicera japonica HOM05D000286 ORTHO05D000170 1.2e-08 63.2 64 59.4
VMungo0464G0713 Vigna mungo HOM05D000286 ORTHO05D000170 1.2e-08 63.2 64 56.2
Duzib133G0868 Durio zibethinus HOM05D000286 ORTHO05D000170 1.5e-08 62.8 60 60.0
Lj2g0009640 Lotus japonicus HOM05D000286 ORTHO05D000170 1.5e-08 62.8 63 55.6
Manes.01G110400 Manihot esculenta HOM05D000286 ORTHO05D000170 1.5e-08 62.8 63 57.1
CiPaw.03G061400 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.0e-08 62.4 63 58.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.0e-08 62.4 63 58.7
QL02p051429 Quercus lobata HOM05D000286 ORTHO05D000170 2.0e-08 62.4 63 55.6
Nn3g17859 Nelumbo nucifera HOM05D000286 ORTHO05D000170 2.6e-08 62.0 63 55.6
Atru.chr1.1700 Acer truncatum HOM05D000286 ORTHO05D000170 3.4e-08 61.6 63 57.1
Ah.16g101770 Amaranthus hybridus HOM05D000286 ORTHO05D000170 3.4e-08 61.6 55 63.6
MD09G1252900 Malus domestica HOM05D000286 ORTHO05D000170 3.4e-08 61.6 63 58.7
VMungo0720G0525 Vigna mungo HOM05D000286 ORTHO05D000170 3.4e-08 61.6 63 52.4
DCAR_017192 Daucus carota HOM05D000286 ORTHO05D000170 4.4e-08 61.2 58 60.3
Thhalv10013709m.g Eutrema salsugineum HOM05D000286 ORTHO05D000170 4.4e-08 61.2 63 55.6
Rhsim10G0067100 Rhododendron simsii HOM05D000286 ORTHO05D000170 4.4e-08 61.2 60 56.7
AUR62008998 Chenopodium quinoa HOM05D000286 ORTHO05D000170 5.8e-08 60.8 62 58.1
Cc00_g15700 Coffea canephora HOM05D000286 ORTHO05D000170 5.8e-08 60.8 63 55.6
Carub.0006s1431 Capsella rubella HOM05D000286 ORTHO05D000170 7.6e-08 60.5 63 54.0
Carub.0055s0002 Capsella rubella HOM05D000286 ORTHO05D000170 7.6e-08 60.5 63 54.0
Cpa.g.sc282.11 Carica papaya HOM05D000286 ORTHO05D000170 7.6e-08 60.5 58 58.6
CDE12G0917 Ceratophyllum demersum HOM05D000286 ORTHO05D000170 7.6e-08 60.5 63 57.1
COL.COLO4_09327 Corchorus olitorius HOM05D000286 ORTHO05D000170 7.6e-08 60.5 63 57.1
Eucgr.F02494 Eucalyptus grandis HOM05D000286 ORTHO05D000170 7.6e-08 60.5 63 54.0
Manes.01G110500 Manihot esculenta HOM05D000286 ORTHO05D000170 7.6e-08 60.5 71 50.7
PSO017G1987 Papaver somniferum HOM05D000286 ORTHO05D000170 7.6e-08 60.5 59 61.0
BcaNung02223 Brassica carinata HOM05D000286 ORTHO05D000170 9.9e-08 60.1 63 54.0
CANSAT78G0849 Cannabis sativa HOM05D000286 ORTHO05D000170 9.9e-08 60.1 68 52.9
Ca_04049_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 9.9e-08 60.1 63 55.6
Lj1g0016569 Lotus japonicus HOM05D000286 ORTHO05D000170 9.9e-08 60.1 60 58.3
arahy.Tifrunner.gnm1.ann1.H4CNNK Arachis hypogaea HOM05D000286 ORTHO05D000170 1.3e-07 59.7 63 52.4
EL10Ac5g10682 Beta vulgaris HOM05D000286 ORTHO05D000170 1.3e-07 59.7 55 61.8
MBI16_g23777_MAGBIO Magnolia biondii HOM05D000286 ORTHO05D000170 1.3e-07 59.7 58 60.3
Sed0027319 Sechium edule HOM05D000286 ORTHO05D000170 1.3e-07 59.7 63 54.0
THA.LOC104820948 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 1.3e-07 59.7 63 55.6
A02p03400 Brassica napus HOM05D001926 ORTHO05D000170 1.7e-07 59.3 63 54.0
BraA02t05311Z Brassica rapa HOM05D001926 ORTHO05D000170 1.7e-07 59.3 63 54.0
Duzib138G1029 Durio zibethinus HOM05D000286 ORTHO05D000170 1.7e-07 59.3 58 60.3
MD17G1244600 Malus domestica HOM05D000286 ORTHO05D000170 1.7e-07 59.3 63 57.1
MSTRG.15293 Avicennia marina HOM05D000286 ORTHO05D000170 2.2e-07 58.9 59 57.6
BcaC03g18470 Brassica carinata HOM05D001926 ORTHO05D000170 2.2e-07 58.9 63 52.4
CARHR197180 Cardamine hirsuta HOM05D000286 ORTHO05D000170 2.2e-07 58.9 63 54.0
Lalb_Chr24g0397811 Lupinus albus HOM05D000286 ORTHO05D000170 2.2e-07 58.9 68 47.1
A10p22920 Brassica napus HOM05D001926 ORTHO05D000170 2.9e-07 58.5 58 56.9
MELO3C022099.2 Cucumis melo HOM05D000286 ORTHO05D000170 2.9e-07 58.5 63 54.0
Lalb_Chr04g0257461 Lupinus albus HOM05D000286 ORTHO05D000170 2.9e-07 58.5 63 52.4
Medtr6g084420 Medicago truncatula HOM05D000286 ORTHO05D000170 2.9e-07 58.5 68 47.1
TPR.G9722 Trifolium pratense HOM05D000286 ORTHO05D000170 2.9e-07 58.5 63 55.6
CsaV3_5G039220 Cucumis sativus L. HOM05D000286 ORTHO05D000170 3.8e-07 58.2 63 54.0
Medtr7g007260 Medicago truncatula HOM05D000286 ORTHO05D000170 3.8e-07 58.2 63 55.6
TWI77G0039 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 3.8e-07 58.2 66 51.5
Aa31LG11G13490 Aethionema arabicum HOM05D000286 ORTHO05D000170 4.9e-07 57.8 70 47.1
Migut.H00216 Erythranthe guttata HOM05D000286 ORTHO05D000170 4.9e-07 57.8 63 55.6
Lalb_Chr06g0174561 Lupinus albus HOM05D000286 ORTHO05D000170 4.9e-07 57.8 62 54.8
TAR371G0426 Trochodendron aralioides HOM05D000286 ORTHO05D000170 4.9e-07 57.8 68 52.9
TAR629G2561 Trochodendron aralioides HOM05D000286 ORTHO05D000170 4.9e-07 57.8 63 52.4
ATR1125G009 Amborella trichopoda HOM05D000286 ORTHO05D000170 6.4e-07 57.4 63 50.8
Cc11_g03710 Coffea canephora HOM05D000286 ORTHO05D000170 6.4e-07 57.4 63 55.6
SalBow3G4081 Salvia bowleyana HOM05D000286 ORTHO05D000170 6.4e-07 57.4 55 60.0
AL6G27000 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 52.4
AT5G16120 Arabidopsis thaliana HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 52.4
Cpa.g.sc1.32 Carica papaya HOM05D000286 ORTHO05D000170 8.4e-07 57.0 59 52.5
Ca_03056_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 50.8
Ca_11168_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 50.8
Migut.L00316 Erythranthe guttata HOM05D000286 ORTHO05D000170 8.4e-07 57.0 58 56.9
Gohir.A12G054000 Gossypium hirsutum HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 55.6
Gohir.D12G052600 Gossypium hirsutum HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 55.6
Phvul.007G028000 Phaseolus vulgaris HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 49.2
Psat3g205320 Pisum sativum HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 55.6
Sp6g28020 Schrenkiella parvula HOM05D000286 ORTHO05D000170 8.4e-07 57.0 63 52.4
BraA10t44360Z Brassica rapa HOM05D000286 ORTHO05D000170 1.1e-06 56.6 63 52.4
Lj2g0019092 Lotus japonicus HOM05D000286 ORTHO05D000170 1.1e-06 56.6 68 45.6
arahy.Tifrunner.gnm1.ann1.NI1FRU Arachis hypogaea HOM05D000286 ORTHO05D000170 1.4e-06 56.2 70 47.1
Thecc.04G134000 Theobroma cacao HOM05D000286 ORTHO05D000170 1.4e-06 56.2 63 55.6
GSVIVG01031026001 Vitis vinifera HOM05D000286 ORTHO05D000170 1.4e-06 56.2 63 54.0
Glyma.20G116400 Glycine max HOM05D000286 ORTHO05D000170 1.9e-06 55.8 59 50.8
Lalb_Chr02g0145911 Lupinus albus HOM05D000286 ORTHO05D000170 1.9e-06 55.8 59 50.8
Lalb_Chr04g0254711 Lupinus albus HOM05D000286 ORTHO05D000170 1.9e-06 55.8 59 52.5
Phvul.003G030900 Phaseolus vulgaris HOM05D000286 ORTHO05D000170 1.9e-06 55.8 63 49.2
arahy.Tifrunner.gnm1.ann1.49015S Arachis hypogaea HOM05D000286 ORTHO05D000170 2.4e-06 55.5 55 52.7
SEGI_06662 Sequoiadendron giganteum HOM05D000286 ORTHO05D000170 2.4e-06 55.5 63 49.2
TAR629G2246 Trochodendron aralioides HOM05D000286 ORTHO05D000170 2.4e-06 55.5 60 53.3
CSS0016141 Camellia sinensis var. sinensis HOM05D000286 ORTHO05D000170 3.2e-06 55.1 63 54.0
Psat1g037320 Pisum sativum HOM05D000286 ORTHO05D000170 3.2e-06 55.1 63 47.6
SMO172G0213 Selaginella moellendorffii HOM05D000286 ORTHO05D000170 3.2e-06 55.1 66 48.5
Aqoxy3G00283 Aquilegia oxysepala HOM05D000286 ORTHO05D000170 4.2e-06 54.7 63 50.8
C02p08160 Brassica napus HOM05D001926 ORTHO05D000170 4.2e-06 54.7 58 53.4
BolC2t06739H Brassica oleracea HOM05D001926 ORTHO05D000170 4.2e-06 54.7 58 53.4
ClCG11G005460 Citrullus lanatus HOM05D000286 ORTHO05D000170 4.2e-06 54.7 57 56.1
Glyma.09G184000 Glycine max HOM05D000286 ORTHO05D000170 4.2e-06 54.7 60 48.3
Gorai.008G055800 Gossypium raimondii HOM05D000286 ORTHO05D000170 4.2e-06 54.7 62 54.8
Medtr1g110670 Medicago truncatula HOM05D000286 ORTHO05D000170 4.2e-06 54.7 59 50.8
SEGI_27143 Sequoiadendron giganteum HOM05D000286 ORTHO05D000170 4.2e-06 54.7 60 50.0
Lsat_1_v5_gn_2_79441 Lactuca sativa HOM05D000286 ORTHO05D000170 5.4e-06 54.3 63 52.4
Lj5g0008340 Lotus japonicus HOM05D000286 ORTHO05D000170 5.4e-06 54.3 59 52.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 5.4e-06 54.3 58 53.4
VMungo1215G2188 Vigna mungo HOM05D000286 ORTHO05D000170 5.4e-06 54.3 63 47.6
GSVIVG01011888001 Vitis vinifera HOM05D000286 ORTHO05D000170 5.4e-06 54.3 63 46.0
Ca_25490_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 7.1e-06 53.9 63 49.2
MD16G1042000 Malus domestica HOM05D000286 ORTHO05D000170 7.1e-06 53.9 62 48.4
Os10g0135600 Oryza sativa ssp. japonica HOM05D000286 ORTHO05D000170 7.1e-06 53.9 59 52.5
PGR004G0527 Punica granatum HOM05D000286 ORTHO05D000170 7.1e-06 53.9 63 49.2
THA.LOC104802440 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 7.1e-06 53.9 63 52.4
Zm00001eb026120 Zea mays HOM05D000286 ORTHO05D000170 7.1e-06 53.9 63 49.2
Haze_14151 Corylus avellana HOM05D000286 ORTHO05D000170 9.3e-06 53.5 50 64.0
HPP92_023127 Vanilla planifolia HOM05D000286 ORTHO05D000170 9.3e-06 53.5 64 46.9


User provided reference genes

Program Settings