Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 1.8e-84 315.8 158 100.0
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.6e-80 302.8 158 95.6
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.1e-76 290.0 158 93.7
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 9.0e-76 287.0 158 93.0
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.0e-74 283.5 158 92.4
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 6.5e-74 280.8 158 89.9
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 4.5e-67 258.1 158 81.6
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 6.5e-66 254.2 135 94.8
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 5.5e-65 251.1 154 79.2
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 1.1e-54 216.9 149 72.5
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 2.8e-53 212.2 153 68.6
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 2.4e-52 209.1 155 65.2
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.2e-51 206.8 147 68.7
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 1.6e-51 206.5 155 66.5
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 2.0e-51 206.1 154 66.2
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 4.5e-51 204.9 156 66.7
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 1.5e-49 199.9 150 68.0
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.5e-49 199.9 153 66.7
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.2e-49 198.7 125 77.6
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 4.2e-49 198.4 123 75.6
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 4.2e-49 198.4 155 64.5
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 9.4e-49 197.2 157 62.4
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.2e-48 196.8 146 63.7
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.2e-48 196.8 125 75.2
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 3.6e-48 195.3 146 65.1
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.7e-48 194.9 123 74.0
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 6.1e-48 194.5 150 61.3
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 8.0e-48 194.1 151 64.9
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.4e-47 193.4 130 72.3
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 1.4e-47 193.4 144 66.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.8e-47 193.0 132 72.7
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.3e-47 192.6 126 73.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 3.0e-47 192.2 158 64.6
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 3.0e-47 192.2 152 67.1
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 3.0e-47 192.2 159 60.4
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.0e-47 191.8 161 64.6
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 6.8e-47 191.0 155 62.6
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 6.8e-47 191.0 124 72.6
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 6.8e-47 191.0 126 72.2
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 8.8e-47 190.7 152 65.1
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 8.8e-47 190.7 152 64.5
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 8.8e-47 190.7 152 64.5
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 8.8e-47 190.7 119 76.5
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 8.8e-47 190.7 152 65.1
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.5e-46 189.9 129 73.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 2.0e-46 189.5 156 64.7
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 2.0e-46 189.5 125 72.0
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.0e-46 189.5 155 63.2
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.0e-46 189.5 123 75.6
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 2.6e-46 189.1 157 63.7
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 2.6e-46 189.1 156 64.7
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 3.4e-46 188.7 150 60.7
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.4e-46 188.3 151 66.9
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 5.7e-46 188.0 122 69.7
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 5.7e-46 188.0 152 63.8
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 7.5e-46 187.6 151 65.6
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 7.5e-46 187.6 152 64.5
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 9.8e-46 187.2 151 66.2
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 9.8e-46 187.2 123 72.4
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 9.8e-46 187.2 129 71.3
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 9.8e-46 187.2 122 76.2
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.3e-45 186.8 130 68.5
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.2e-45 186.0 120 73.3
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 2.2e-45 186.0 152 63.2
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 4.8e-45 184.9 126 70.6
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 8.3e-45 184.1 159 58.5
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 1.1e-44 183.7 127 70.1
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 1.4e-44 183.3 151 65.6
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.4e-44 183.3 157 59.2
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 1.8e-44 183.0 122 71.3
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 4.1e-44 181.8 125 69.6
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 4.1e-44 181.8 151 63.6
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 5.4e-44 181.4 129 65.1
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 9.1e-44 180.6 127 70.1
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 9.1e-44 180.6 129 71.3
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 3.5e-43 178.7 145 66.9
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 5.0e-42 174.9 142 62.0
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 8.5e-42 174.1 126 64.3
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 8.5e-42 174.1 152 60.5
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.5e-41 173.3 155 60.0
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 1.9e-41 172.9 123 69.1
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.9e-41 172.9 153 60.8
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.9e-41 172.9 118 68.6
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.5e-41 172.6 123 69.1
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 1.6e-40 169.9 148 58.8
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 2.1e-40 169.5 142 57.7
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.7e-40 169.1 148 59.5
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.4e-39 166.8 121 66.1
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 6.8e-39 164.5 128 60.9
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 1.2e-38 163.7 126 62.7
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 1.2e-38 163.7 151 60.3
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.7e-38 161.4 122 67.2
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 5.7e-38 161.4 116 67.2
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 3.7e-37 158.7 122 67.2
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 3.7e-37 158.7 127 63.8
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 1.8e-36 156.4 116 64.7
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.4e-36 156.0 129 58.1
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 3.1e-36 155.6 123 62.6
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 2.7e-35 152.5 130 57.7
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 2.7e-35 152.5 125 60.0
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 2.7e-35 152.5 120 61.7
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 4.5e-35 151.8 125 60.0
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.3e-34 149.4 120 60.8
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 4.3e-33 145.2 151 54.3
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 9.5e-33 144.1 120 59.2
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 6.8e-31 137.9 128 51.6
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 5.4e-28 128.3 120 50.8
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 4.6e-27 125.2 151 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 5.9e-27 124.8 112 55.4
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 5.9e-27 124.8 151 48.3
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 2.5e-25 119.4 109 58.7
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 5.6e-25 118.2 151 44.4
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 1.0e-23 114.0 90 60.0
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.5e-22 110.2 116 50.0
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 5.8e-22 108.2 93 53.8
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 4.1e-20 102.1 122 47.5
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 3.9e-18 95.5 81 55.6
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.1e-17 94.0 99 47.5
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 1.9e-17 93.2 155 39.4
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.9e-17 93.2 91 53.8
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 6.8e-15 84.7 110 38.2
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 2.9e-13 79.3 113 43.4
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 6.0e-11 71.6 56 66.1
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.3e-10 69.7 49 75.5
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 9.9e-06 54.3 63 50.8
SEGI_35230 Sequoiadendron giganteum HOM05D006402 ORTHO05D387249 9.9e-06 54.3 49 46.9


User provided reference genes

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