Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 4303.4 2442 100.0
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 4139.0 2403 96.3
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 3640.5 2313 85.4
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 3564.6 2162 89.9
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 3342.0 2331 79.8
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 3305.4 2296 79.2
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2684.4 2192 66.1
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2646.7 1888 72.5
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2642.5 2034 68.8
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2610.1 2083 66.4
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2573.1 2069 66.6
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2561.9 2304 60.8
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2557.7 2014 66.6
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2545.4 2064 65.1
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2519.6 2036 65.6
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2511.1 2079 64.2
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2504.2 2011 65.7
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2499.2 2080 63.9
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2496.5 2245 60.7
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2490.7 2082 63.9
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2489.1 2080 64.2
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2489.1 2301 59.8
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2485.3 2248 60.6
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2483.4 2283 59.9
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2477.2 2013 64.8
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2474.1 2253 60.4
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2446.4 2258 59.5
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2440.6 2037 63.7
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2439.5 2031 63.9
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2427.9 2050 63.5
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2422.5 2221 60.2
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2421.7 2114 62.0
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2415.2 2427 56.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2414.0 2038 62.9
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2408.3 2049 63.7
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2387.5 2575 54.5
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2384.8 2133 60.3
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2380.5 2157 59.9
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2378.2 1997 62.9
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2371.3 1963 64.9
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2366.3 2352 57.3
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2364.3 2082 61.1
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2363.6 1633 74.4
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2360.1 2049 61.6
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2357.8 2075 61.3
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2350.5 2175 60.5
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2349.7 2077 60.8
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2345.9 2294 56.6
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2334.3 2069 60.6
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2328.9 2067 61.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2325.1 2067 60.7
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2309.6 2152 58.5
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2308.1 2253 56.2
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2269.2 2094 59.0
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2258.0 2198 57.7
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2235.3 2104 59.6
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2233.4 2073 58.6
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2233.0 2098 58.2
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2226.8 2047 59.1
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2226.8 2047 59.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2222.6 2101 58.8
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2221.8 2069 59.5
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2205.3 2083 58.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2203.7 2082 58.2
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2191.4 2098 57.9
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2189.5 2326 54.3
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2188.3 2230 55.2
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2185.6 2231 55.2
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2185.2 1998 59.6
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2183.3 2048 57.7
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2110.9 2063 56.7
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2096.2 1453 74.2
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1928.7 3048 41.4
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1859.0 1680 60.4
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1833.9 2071 51.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1818.1 2096 50.2
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1717.2 1128 77.6
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1637.9 1780 53.2
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1623.2 2035 47.3
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1618.2 1718 52.9
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1588.5 1527 56.8
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1543.5 1991 45.0
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1485.7 2106 44.2
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1354.7 1348 54.0
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1297.7 2043 40.9
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1270.0 2033 40.8
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1214.9 919 67.4
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1198.3 1557 45.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1178.7 2053 37.6
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1129.0 2146 36.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1122.5 1031 57.8
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 8.5e-306 1055.0 1351 47.5
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 5.7e-302 1042.3 849 64.9
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 8.0e-280 968.8 824 60.8
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 4.0e-263 913.3 991 52.5
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.1e-260 905.2 1264 45.8
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.1e-225 788.9 725 59.3
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 3.9e-218 763.8 910 48.8
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 3.4e-214 750.7 817 52.6
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.8e-208 731.1 1074 43.4
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.0e-194 686.0 441 79.1
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 5.7e-193 680.2 578 61.4
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 1.5e-182 645.6 901 44.8
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 8.8e-178 629.8 771 48.4
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 1.1e-175 622.9 475 68.4
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 9.1e-167 593.2 435 71.7
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.4e-161 574.7 386 75.1
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.6e-155 555.8 374 75.4
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.4e-135 489.6 403 62.5
PGSC0003DMG400012673 Solanum tuberosum HOM05D003845 ORTHO05D004161 3.9e-133 481.5 498 85.3
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 2.3e-109 402.5 810 35.4
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.1e-108 400.2 361 61.5
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 6.2e-107 394.4 288 70.1
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 4.6e-102 378.3 264 72.3
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.2e-96 359.4 774 33.5
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 7.9e-94 350.9 1507 27.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.4e-89 335.5 293 59.0
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 6.1e-86 324.7 286 62.2
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 4.8e-83 315.1 1784 23.6
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.6e-78 300.1 468 39.1
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 8.2e-75 287.7 160 93.8
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 2.0e-73 283.1 314 51.3
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 6.3e-67 261.5 423 41.4
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.5e-65 255.8 317 51.1
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.0e-60 240.0 152 77.0
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.7e-56 226.9 148 78.4
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 2.6e-52 213.0 157 66.2
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 5.7e-52 211.8 187 63.1
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 9.8e-52 211.1 180 65.6
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 9.8e-52 211.1 180 65.6
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 9.8e-52 211.1 180 65.6
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 6.5e-48 198.4 125 83.2
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.4e-44 186.0 119 82.4
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 7.0e-42 178.3 276 40.6
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 4.2e-39 169.1 129 71.3
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 8.0e-38 164.9 147 59.9
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.6e-31 142.1 194 42.8
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 1.0e-29 137.9 369 30.1
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.8e-29 137.1 275 35.3
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 4.0e-29 136.0 78 92.3
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.4e-26 127.5 116 62.1
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 3.3e-23 116.3 685 22.9
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 2.3e-21 110.2 491 26.1
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 4.0e-21 109.4 274 38.3
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 6.8e-21 108.6 107 57.9
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-19 103.6 69 79.7
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 4.9e-19 102.4 75 66.7
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 7.1e-18 98.6 75 68.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.7e-17 96.7 61 70.5
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 7.8e-17 95.1 134 44.8
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.9e-16 92.8 64 65.6
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.5e-15 88.2 54 74.1
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.6e-14 87.4 54 79.6
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 1.6e-14 87.4 54 79.6
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.1e-14 87.0 53 81.1
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 4.7e-14 85.9 57 80.7
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.8e-13 84.0 55 65.5
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 6.8e-13 82.0 54 77.8
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 2.0e-12 80.5 115 40.0
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 3.4e-12 79.7 70 64.3
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 4.4e-12 79.3 72 62.5
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 5.8e-12 79.0 51 78.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.3e-11 77.8 66 68.2
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 2.2e-11 77.0 58 67.2
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.9e-11 75.9 92 51.1
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.1e-10 74.7 100 52.0
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.1e-10 72.0 42 78.6
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 7.8e-09 68.6 57 68.4
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 3.0e-08 66.6 48 62.5
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 8.6e-08 65.1 208 29.3
Hund29189 Selenicereus undatus HOM05D008000 ORTHO05D000006 2.8e-06 60.1 77 48.1
Hund29191 Selenicereus undatus HOM05D008000 ORTHO05D000006 2.8e-06 60.1 77 48.1
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.7e-06 59.3 68 50.0
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 4.7e-06 59.3 63 54.0
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.2e-06 58.9 50 66.0
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 6.2e-06 58.9 41 65.9


User provided reference genes

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