Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 0.0e+00 1311.6 660 100.0
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 0.0e+00 1276.9 660 97.3
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 7.2e-268 927.2 678 72.3
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.2e-267 926.4 677 71.5
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.0e-263 910.6 677 71.6
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-252 875.5 677 67.4
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.8e-249 863.6 756 61.5
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 2.8e-248 862.1 672 68.5
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 2.9e-240 835.5 680 66.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 2.1e-227 792.7 672 62.6
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.8e-187 659.4 461 72.5
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.8e-154 550.4 691 46.6
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.0e-149 533.1 692 46.2
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.1e-146 524.6 702 45.7
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-146 524.2 703 45.8
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.4e-146 524.2 694 45.8
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 7.0e-146 521.9 702 44.6
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.5e-143 514.2 693 46.3
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 5.5e-143 512.3 691 44.0
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 6.1e-142 508.8 694 44.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.8e-138 497.3 703 41.5
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.0e-136 491.5 719 40.5
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.0e-133 481.5 698 42.7
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 8.3e-131 471.9 663 41.5
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.4e-130 470.3 345 68.4
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.0e-128 464.9 690 41.6
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.0e-128 464.9 694 41.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.3e-128 464.5 686 42.4
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.3e-128 463.8 697 40.5
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.0e-125 454.9 688 40.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.8e-125 454.1 686 39.9
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 7.5e-124 448.7 706 39.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.1e-122 444.9 699 39.5
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.2e-122 443.4 701 40.1
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.5e-121 439.9 714 39.5
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 6.6e-120 435.6 715 38.5
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 8.6e-120 435.3 712 38.6
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.5e-119 433.7 563 45.6
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.6e-118 431.0 711 38.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.8e-118 430.3 705 39.3
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.6e-118 429.9 709 39.1
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.4e-117 427.9 716 41.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.1e-117 426.8 716 39.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 8.9e-117 425.2 716 39.0
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.0e-116 424.1 671 39.9
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 4.4e-116 422.9 723 37.9
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 5.8e-116 422.5 695 38.6
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.4e-114 417.2 716 38.4
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 5.4e-114 416.0 707 38.6
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 3.0e-112 410.2 688 38.7
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.9e-112 409.8 701 39.1
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 6.6e-112 409.1 717 37.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-111 407.9 702 38.3
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.5e-111 407.9 723 37.9
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.2e-110 404.8 672 38.7
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.8e-110 403.7 715 38.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.4e-109 401.4 202 95.5
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 8.9e-109 398.7 694 38.6
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 8.9e-109 398.7 703 36.0
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.2e-108 398.3 714 37.4
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.5e-108 397.9 700 37.9
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.0e-108 397.5 680 36.6
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.0e-108 397.5 698 37.1
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 7.5e-108 395.6 670 37.2
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.9e-108 395.2 713 36.3
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.3e-107 392.1 722 37.3
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.1e-106 391.7 549 44.3
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.9e-106 391.0 698 36.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 5.4e-106 389.4 677 35.7
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 7.1e-106 389.0 696 36.9
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.7e-104 384.4 652 38.7
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-104 384.0 711 36.7
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-103 381.7 626 38.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 7.3e-103 379.0 695 37.4
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 6.8e-101 372.5 601 37.4
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.9e-99 367.1 692 38.0
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-96 357.8 703 35.7
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.9e-96 356.7 707 35.6
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 8.7e-96 355.5 708 35.6
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.1e-95 355.1 712 35.7
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.1e-95 355.1 708 35.6
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.5e-95 354.8 652 36.5
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.6e-95 352.8 578 37.7
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 7.3e-95 352.4 592 38.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.1e-94 350.9 632 37.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.1e-94 350.9 591 38.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.2e-94 349.4 703 35.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.1e-93 348.6 635 36.2
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 9.0e-93 345.5 711 34.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 4.4e-92 343.2 703 36.0
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 7.6e-92 342.4 686 36.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.9e-92 342.0 701 35.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.1e-90 338.6 711 34.0
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 9.3e-90 335.5 629 35.1
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.3e-86 325.1 702 33.9
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.1e-85 320.5 628 36.0
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 3.5e-81 307.0 557 37.0
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.4e-77 294.3 671 33.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.4e-74 284.3 601 34.1
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.7e-73 280.8 473 39.7
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.1e-70 271.2 455 38.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.8e-69 268.1 496 35.7
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.7e-67 261.5 636 32.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.9e-67 260.0 725 29.9
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 5.5e-66 256.5 716 31.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.2e-65 255.4 625 31.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.7e-65 254.2 681 31.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.7e-65 254.2 755 29.3
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.0e-64 250.8 467 38.5
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.3e-63 246.9 512 34.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.7e-63 246.5 472 33.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.4e-60 237.3 674 30.4
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 4.5e-60 236.9 368 39.1
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.8e-59 233.8 507 33.7
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.0e-59 233.4 353 36.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.5e-59 232.6 420 37.1
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.5e-58 231.1 663 28.5
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.6e-57 227.3 551 32.7
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.3e-56 224.6 709 28.2
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.3e-56 224.6 709 28.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.8e-54 217.6 471 33.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.0e-48 199.1 472 32.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.5e-44 183.7 434 31.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.3e-30 139.0 370 27.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 4.8e-30 137.1 245 38.4
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.1e-29 136.0 240 35.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.4e-29 135.6 364 31.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.1e-29 134.4 220 40.0
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 5.3e-29 133.7 234 36.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.7e-28 131.3 217 35.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.7e-28 131.3 272 33.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.0e-27 127.1 219 37.4
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-26 125.9 223 34.5
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.9e-26 125.2 232 36.6
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.2e-26 124.0 198 42.4
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 4.7e-25 120.6 318 31.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.0e-24 117.5 449 27.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.0e-23 115.2 128 47.7
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.8e-23 112.8 154 38.3
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 4.8e-22 110.5 419 25.1
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.4e-21 109.0 240 32.1
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 5.4e-21 107.1 192 39.6
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 4.5e-20 104.0 348 27.3
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.8e-19 100.9 332 28.0
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.3e-16 91.7 102 46.1
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.8e-13 82.0 196 30.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.2e-12 79.3 94 44.7
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.8e-12 76.6 80 45.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.3e-11 75.9 90 38.9
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.3e-11 75.1 82 46.3
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.9e-11 74.7 225 28.0
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.5e-10 71.6 126 37.3
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 4.3e-10 70.9 575 23.0
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.0e-09 66.6 48 52.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.0e-08 66.2 95 41.1
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.8e-08 65.5 113 36.3
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.8e-08 65.5 81 44.4
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.8e-08 63.5 92 40.2
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-07 62.4 139 33.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-06 59.3 89 40.4
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 8.3e-06 56.6 81 46.9


User provided reference genes

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