Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 2105.9 1052 100.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 2100.1 1052 99.6
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1848.6 1061 87.7
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1811.2 1138 81.5
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1757.3 1053 84.1
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1381.3 1056 63.4
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1380.5 1060 64.2
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1373.6 1054 63.5
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1372.8 1053 64.7
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1365.1 1108 62.5
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1364.4 1058 63.3
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1362.8 1055 64.1
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1321.2 1060 62.6
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1318.9 1062 62.8
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1290.4 1169 57.1
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1289.6 1048 60.6
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1288.1 1054 60.7
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1280.4 1052 60.2
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1250.3 1044 59.8
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1051 59.9
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1248.8 1038 60.2
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1245.0 1047 59.6
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1244.6 1044 59.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1243.8 1068 57.9
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1242.3 1047 60.0
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1242.3 1050 59.4
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1241.9 1041 59.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1239.6 1053 59.1
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1238.0 1047 59.6
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1237.6 1035 59.3
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1234.9 1047 57.5
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1233.0 1078 58.8
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1229.9 1065 59.0
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1226.1 1055 58.1
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 0.0e+00 1225.3 736 85.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1224.5 1054 59.0
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1223.4 1046 58.4
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1223.0 1048 59.3
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1215.3 1046 58.8
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1211.4 1044 57.9
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1210.3 1056 57.9
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1210.3 1046 57.9
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1209.9 1080 55.6
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1209.5 1083 56.3
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1208.7 1045 58.2
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1204.9 1046 57.7
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1201.0 1051 57.1
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1200.7 1079 55.3
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1200.3 1057 57.4
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 0.0e+00 1197.6 707 86.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1196.0 1048 57.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1196.0 1044 58.0
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1196.0 1126 55.1
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1195.3 1065 56.3
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1188.7 1045 56.7
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1188.3 1048 56.0
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1188.3 1053 57.9
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1187.9 1065 56.2
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1187.6 1014 57.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1187.2 1055 56.6
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1186.0 1061 56.4
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1182.5 1046 56.9
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1178.7 1076 56.5
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1177.5 1047 56.0
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1176.4 1046 56.2
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1175.6 1048 56.8
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1175.2 1048 57.0
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1174.5 1048 56.8
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1174.1 1048 56.9
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1173.3 1058 55.5
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1173.3 1054 55.2
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1049 56.1
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1164.4 1044 56.4
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1162.1 1060 56.2
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1160.6 1044 55.8
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1159.1 1049 55.9
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1153.7 1048 55.8
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1150.6 1048 55.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1140.9 1044 55.9
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1138.6 1186 52.4
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1137.1 1069 54.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1132.5 1050 55.1
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1125.2 1031 54.1
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1112.4 1103 53.0
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1112.4 1036 55.8
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1102.4 1045 53.7
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1081.2 1045 53.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1078.2 1047 53.2
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 7.2e-312 1073.5 1046 52.2
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 7.1e-310 1067.4 1047 51.7
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 2.8e-298 1028.9 1054 48.9
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 4.8e-290 1001.5 1044 51.7
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 1.8e-289 999.6 847 58.1
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 5.9e-280 968.0 869 55.1
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.1e-267 927.2 1019 47.3
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 2.6e-264 916.0 1059 47.6
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-250 870.5 899 52.2
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 8.6e-231 804.7 673 58.4
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.2e-226 790.0 1056 41.6
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.7e-218 763.8 879 47.7
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 6.4e-218 761.9 670 56.6
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.4e-196 691.0 508 65.2
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 6.0e-192 675.6 815 45.0
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 5.3e-188 662.5 723 50.1
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 6.4e-186 655.6 351 91.7
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 9.6e-182 641.7 696 47.4
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.9e-174 617.5 991 36.8
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.3e-173 614.8 848 40.1
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 9.0e-172 608.6 1040 36.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.6e-168 596.7 857 39.1
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.0e-162 578.6 539 56.0
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.7e-162 577.8 522 55.7
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 1.5e-155 554.7 599 50.1
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.8e-143 514.6 514 51.6
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 4.5e-139 500.0 483 53.8
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 4.3e-121 440.3 357 60.8
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 8.9e-119 432.6 376 56.4
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 3.5e-115 420.6 449 47.2
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 6.2e-112 409.8 221 91.9
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.4e-108 398.7 344 58.4
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 3.2e-108 397.5 851 31.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.1e-104 384.8 351 56.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.8e-88 331.3 1107 27.8
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 2.9e-77 294.7 236 62.7
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.4e-70 271.2 259 54.1
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.9e-65 255.4 291 49.1
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-59 234.2 387 38.8
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 2.5e-57 228.4 242 52.1
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 4.3e-57 227.6 979 24.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.7e-57 227.3 506 32.6
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 6.9e-55 220.3 174 62.6
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-53 215.7 272 46.7
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.2e-52 211.1 201 50.2
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 7.2e-52 210.3 1168 24.1
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.9e-42 177.9 152 50.0
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-39 169.1 127 67.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.8e-37 161.4 218 45.4
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.7e-35 155.2 308 34.4
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.4e-31 142.1 189 41.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.0e-26 125.2 113 61.1
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-25 122.1 325 28.3
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 3.4e-25 121.7 100 60.0
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 1.2e-22 113.2 71 73.2
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 4.5e-22 111.3 77 68.8
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 6.5e-21 107.5 99 55.6
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 4.7e-19 101.3 156 40.4
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.0e-18 100.1 102 45.1
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 2.0e-17 95.9 83 51.8
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 5.7e-17 94.4 154 39.6
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 1.0e-13 83.6 104 42.3
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 5.0e-13 81.3 156 34.0
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 5.6e-12 77.8 70 55.7
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 2.8e-11 75.5 70 52.9
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 6.8e-10 70.9 110 34.5
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.9e-08 65.5 75 49.3


User provided reference genes

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