Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.4e-60 236.1 120 100.0
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.6e-59 231.9 120 98.3
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.1e-52 208.0 122 91.0
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.4e-44 182.2 122 82.0
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.9e-40 167.2 119 77.3
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.4e-38 161.4 116 74.1
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-37 159.8 116 75.9
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.8e-37 158.7 113 77.0
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 8.2e-37 157.1 121 72.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.1e-32 142.5 111 72.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.8e-31 139.4 114 71.9
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.9e-31 138.3 121 69.4
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.1e-30 136.7 117 65.8
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.7e-30 134.4 111 73.0
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.1e-28 128.6 115 62.6
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.1e-28 128.3 107 64.5
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 2.4e-20 102.4 109 54.1
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.7e-18 96.3 112 51.8
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.2e-18 95.9 111 50.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 8.5e-18 94.0 104 49.0
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 4.2e-17 91.7 115 49.6
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 9.4e-17 90.5 119 45.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 9.4e-17 90.5 106 49.1
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.1e-16 89.4 107 52.3
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.0e-15 87.0 109 48.6
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 2.3e-15 85.9 111 46.8
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.0e-15 85.5 118 50.8
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.0e-15 85.5 105 49.5
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 5.2e-15 84.7 105 48.6
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.2e-14 83.6 107 46.7
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.0e-14 82.8 130 38.5
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 5.7e-14 81.3 110 45.5
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.7e-14 81.3 124 39.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.7e-14 81.3 124 39.5
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 5.7e-14 81.3 108 49.1
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 9.8e-14 80.5 120 45.0
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.3e-13 80.1 124 41.1
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.3e-13 80.1 112 48.2
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.7e-13 78.6 120 42.5
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 4.8e-13 78.2 103 44.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 4.8e-13 78.2 118 42.4
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 4.8e-13 78.2 112 42.0
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 4.8e-13 78.2 121 40.5
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.3e-13 77.8 118 42.4
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 8.3e-13 77.4 105 46.7
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.8e-12 76.3 136 37.5
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.8e-12 76.3 112 45.5
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 4.1e-12 75.1 112 39.3
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 5.4e-12 74.7 105 40.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.6e-11 73.2 113 46.0
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.0e-11 72.8 107 40.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.7e-11 72.4 110 39.1
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 3.5e-11 72.0 112 45.5
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 7.7e-11 70.9 119 43.7
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.7e-11 70.9 116 40.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.7e-11 70.9 108 41.7
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.3e-10 70.1 117 41.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.3e-10 70.1 107 40.2
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.3e-10 70.1 135 40.0
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.3e-10 70.1 107 42.1
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.3e-10 69.3 118 37.3
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 5.0e-10 68.2 111 41.4
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 5.0e-10 68.2 115 42.6
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.6e-10 67.4 115 41.7
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.1e-09 67.0 117 35.0
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-09 66.6 112 37.5
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.5e-09 66.6 115 40.9
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.5e-09 65.9 109 40.4
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 3.3e-09 65.5 110 43.6
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.3e-09 65.5 122 34.4
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 4.2e-09 65.1 113 38.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-09 65.1 113 38.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-09 65.1 113 38.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 4.2e-09 65.1 113 38.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 4.2e-09 65.1 113 38.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 4.2e-09 65.1 110 41.8
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 5.5e-09 64.7 107 39.3
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 7.2e-09 64.3 118 38.1
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 7.2e-09 64.3 116 36.2
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 7.2e-09 64.3 111 35.1
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-08 63.5 117 38.5
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.2e-08 63.5 115 35.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.2e-08 63.5 104 37.5
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.2e-08 63.5 121 36.4
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.6e-08 63.2 117 38.5
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.6e-08 63.2 116 36.2
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.1e-08 62.8 110 40.0
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-08 62.8 112 39.3
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 117 39.3
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.8e-08 62.4 111 36.9
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.8e-08 62.4 122 38.5
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 2.8e-08 62.4 124 31.5
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-08 62.0 111 36.9
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 3.6e-08 62.0 112 35.7
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.7e-08 61.6 115 38.3
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.7e-08 61.6 112 37.5
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 4.7e-08 61.6 104 38.5
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.1e-08 61.2 115 38.3
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 6.1e-08 61.2 115 38.3
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 6.1e-08 61.2 112 38.4
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 6.1e-08 61.2 107 39.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 6.1e-08 61.2 112 42.0
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-08 60.8 117 37.6
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 8.0e-08 60.8 109 34.9
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-07 60.5 117 36.8
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-07 60.5 117 36.8
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.0e-07 60.5 117 36.8
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-07 60.1 111 36.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-07 60.1 118 37.3
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-07 60.1 118 37.3
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-07 60.1 117 36.8
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.4e-07 60.1 80 47.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.4e-07 60.1 117 36.8
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-07 59.7 117 36.8
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.3e-07 59.3 114 39.5
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-07 59.3 117 36.8
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-07 59.3 117 36.8
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 2.3e-07 59.3 114 32.5
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 2.3e-07 59.3 115 34.8
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.3e-07 59.3 117 36.8
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 2.3e-07 59.3 114 36.0
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.0e-07 58.9 117 33.3
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.0e-07 58.9 123 36.6
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.0e-07 58.5 114 37.7
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.0e-07 58.5 114 37.7
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-07 58.5 113 34.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-07 58.5 114 34.2
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-07 58.5 113 35.4
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.0e-07 58.5 113 37.2
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.0e-07 58.5 125 37.6
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 5.2e-07 58.2 115 35.7
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-07 58.2 111 39.6
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.2e-07 58.2 111 39.6
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 5.2e-07 58.2 102 37.3
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 5.2e-07 58.2 43 62.8
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 8.9e-07 57.4 118 38.1
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 8.9e-07 57.4 118 38.1
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 8.9e-07 57.4 115 35.7
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-06 57.0 116 36.2
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-06 57.0 111 37.8
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-06 57.0 111 37.8
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-06 57.0 111 37.8
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.5e-06 56.6 120 36.7
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-06 56.6 121 32.2
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 1.5e-06 56.6 109 41.3
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-06 56.6 112 38.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.0e-06 56.2 114 34.2
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-06 55.8 118 37.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.6e-06 55.8 118 36.4
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.4e-06 55.5 127 36.2
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.4e-06 55.5 120 39.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-06 55.1 118 37.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-06 55.1 111 38.7
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.7e-06 54.7 111 38.7
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.7e-06 54.7 111 38.7
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.7e-06 54.7 111 38.7
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.7e-06 54.7 116 40.5
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 7.5e-06 54.3 123 38.2
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 9.8e-06 53.9 123 38.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 9.8e-06 53.9 118 36.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 9.8e-06 53.9 123 37.4
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 9.8e-06 53.9 118 35.6


User provided reference genes

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