Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1414.4 698 100.0
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1412.9 698 99.9
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1396.7 698 98.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1366.3 698 95.6
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1363.6 698 95.4
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1357.0 696 95.4
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1354.0 694 95.5
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1241.5 695 86.2
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1233.0 696 85.5
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1231.9 695 85.2
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1222.2 696 84.8
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1215.3 695 84.5
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1214.9 697 84.9
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1214.9 695 84.6
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1210.7 695 84.2
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 695 83.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1204.9 695 83.9
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1201.4 696 83.8
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1196.4 697 83.2
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1195.6 696 83.0
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1192.9 695 82.3
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 691 82.8
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 694 82.0
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 695 81.6
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 695 81.6
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1186.4 696 81.9
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 697 80.9
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 692 81.1
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 695 82.3
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 695 81.3
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 698 79.7
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 696 82.0
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 693 82.3
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 695 81.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 694 80.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1168.7 692 80.6
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1168.3 696 80.7
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1166.4 747 77.8
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 700 79.4
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 698 79.1
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 695 80.3
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 693 81.5
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 718 79.2
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1156.4 720 79.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 695 79.9
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 79.7
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 696 80.5
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 694 79.8
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 696 79.9
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 696 79.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 700 80.0
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 695 79.4
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 694 79.8
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 695 79.4
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 695 80.1
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 695 79.1
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 695 78.8
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 694 80.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 674 81.6
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 79.1
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 694 79.3
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 694 78.8
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 694 79.0
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 695 77.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 695 77.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 695 80.0
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 698 78.4
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 695 79.0
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 695 79.6
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 699 77.0
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 696 77.3
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 694 77.2
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 694 77.4
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 695 78.4
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 694 78.8
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 696 79.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 719 75.9
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 693 78.4
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1118.6 694 77.2
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 695 75.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 695 76.1
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1112.8 697 76.0
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1112.1 697 76.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 693 78.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1107.4 647 81.1
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 741 73.8
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1103.6 688 75.4
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1102.8 698 77.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1100.5 694 76.5
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1092.0 695 77.6
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1079.7 695 77.3
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 714 72.3
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1075.1 675 75.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 9.5e-312 1073.2 681 77.5
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.3e-311 1070.8 681 77.4
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.2e-310 1069.3 696 76.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 2.8e-310 1068.1 612 83.8
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 3.9e-304 1047.7 695 75.3
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 6.2e-302 1040.4 701 72.6
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.2e-292 1009.6 705 70.2
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.8e-291 1004.6 582 82.8
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 6.6e-288 993.8 690 69.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.8e-276 954.1 639 73.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 2.2e-259 899.0 709 66.1
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 2.7e-257 892.1 540 80.4
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.1e-255 886.7 581 73.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 4.5e-252 874.8 699 61.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-236 823.5 539 75.1
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-230 801.6 704 58.0
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-230 801.6 704 58.0
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 8.2e-230 800.8 697 56.7
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.5e-228 795.0 704 57.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.2e-223 780.4 702 56.1
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.8e-221 773.1 711 56.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.0e-216 755.4 471 79.0
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.1e-185 653.3 386 81.1
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 3.0e-163 579.7 720 45.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.4e-159 566.2 375 74.7
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 8.2e-137 491.9 509 53.2
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.7e-110 404.4 766 35.9
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 9.8e-106 388.7 269 69.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 2.2e-102 377.5 248 74.6
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.0e-98 364.4 344 58.1
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 2.2e-97 360.9 820 32.6
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.0e-82 311.2 181 82.9
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 7.8e-79 299.3 246 64.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.2e-74 285.4 247 60.3
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.4e-72 277.7 166 77.1
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 7.8e-71 272.7 192 69.8
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 8.6e-62 242.7 235 55.3
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 3.3e-61 240.7 640 30.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.6e-50 204.5 125 76.0
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 6.0e-47 193.4 138 73.2
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.6e-42 177.9 145 66.2
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 7.4e-37 159.8 232 42.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 4.8e-36 157.1 93 79.6
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.6e-31 142.1 76 88.2
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 7.9e-31 139.8 75 86.7
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.3e-22 112.5 84 60.7
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.1e-19 102.8 85 56.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 3.6e-15 87.8 87 54.0
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.9e-14 84.3 50 80.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.3e-13 81.3 50 74.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 1.0e-06 59.7 33 81.8


User provided reference genes

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