Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 1.6e-80 302.8 154 100.0
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 2.2e-79 298.9 154 98.7
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 1.0e-60 236.9 152 77.6
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 9.8e-59 230.3 150 78.0
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 4.9e-58 228.0 152 79.6
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 4.1e-57 224.9 153 76.5
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 6.9e-20 101.3 119 47.1
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 9.0e-20 100.9 119 47.1
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 9.0e-20 100.9 153 41.2
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 1.4e-17 93.6 143 42.0
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 1.9e-17 93.2 147 41.5
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 3.2e-17 92.4 73 57.5
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 4.2e-17 92.0 130 43.1
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 7.1e-17 91.3 147 39.5
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 1.2e-16 90.5 53 75.5
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 2.1e-16 89.7 122 46.7
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 2.1e-16 89.7 47 78.7
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 2.7e-16 89.4 101 46.5
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 2.7e-16 89.4 101 46.5
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 2.7e-16 89.4 58 67.2
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 3.5e-16 89.0 70 62.9
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 3.5e-16 89.0 110 45.5
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 6.0e-16 88.2 45 77.8
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 7.9e-16 87.8 70 54.3
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 7.9e-16 87.8 47 78.7
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 7.9e-16 87.8 49 75.5
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 7.9e-16 87.8 55 67.3
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 1.0e-15 87.4 134 40.3
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 1.0e-15 87.4 134 40.3
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 1.0e-15 87.4 49 71.4
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 1.3e-15 87.0 126 38.9
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 1.3e-15 87.0 86 46.5
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 1.7e-15 86.7 134 40.3
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 2.3e-15 86.3 89 44.9
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 2.3e-15 86.3 51 72.5
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 3.0e-15 85.9 48 77.1
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 5.1e-15 85.1 49 69.4
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 5.1e-15 85.1 75 57.3
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 6.6e-15 84.7 85 51.8
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 8.7e-15 84.3 81 54.3
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 8.7e-15 84.3 38 86.8
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 8.7e-15 84.3 38 86.8
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 8.7e-15 84.3 128 39.1
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 1.1e-14 84.0 79 53.2
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 1.9e-14 83.2 87 50.6
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 1.9e-14 83.2 142 40.1
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 2.5e-14 82.8 53 67.9
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 4.3e-14 82.0 111 44.1
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 4.3e-14 82.0 43 81.4
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 4.3e-14 82.0 75 54.7
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 5.6e-14 81.6 44 72.7
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 1.3e-13 80.5 98 41.8
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 2.1e-13 79.7 45 75.6
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 2.8e-13 79.3 101 48.5
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 2.8e-13 79.3 53 60.4
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 8.1e-13 77.8 156 37.2
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 8.1e-13 77.8 92 52.2
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 1.1e-12 77.4 101 47.5
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 1.1e-12 77.4 101 47.5
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 1.8e-12 76.6 38 76.3
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 1.8e-12 76.6 41 73.2
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 4.0e-12 75.5 35 85.7
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 4.0e-12 75.5 61 52.5
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 5.3e-12 75.1 40 80.0
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 5.3e-12 75.1 108 38.0
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 6.9e-12 74.7 71 50.7
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 6.9e-12 74.7 34 85.3
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 9.0e-12 74.3 45 73.3
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 9.0e-12 74.3 40 77.5
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 1.2e-11 73.9 33 87.9
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 1.2e-11 73.9 87 43.7
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 1.5e-11 73.6 50 64.0
Dinv40044 Davidia involucrata HOM05D007510 ORTHO05D009587 2.0e-11 73.2 106 44.3
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 2.0e-11 73.2 35 82.9
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 2.0e-11 73.2 113 38.9
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 2.6e-11 72.8 119 38.7
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 4.5e-11 72.0 41 75.6
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 4.5e-11 72.0 32 84.4
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 5.8e-11 71.6 83 45.8
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 7.6e-11 71.2 39 76.9
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 7.6e-11 71.2 131 36.6
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 7.6e-11 71.2 35 80.0
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 7.6e-11 71.2 42 71.4
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 1.3e-10 70.5 30 90.0
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 1.3e-10 70.5 96 38.5
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 1.7e-10 70.1 31 83.9
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 3.8e-10 68.9 29 89.7
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 4.9e-10 68.6 57 57.9
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 4.9e-10 68.6 47 57.4
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 4.9e-10 68.6 47 57.4
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 6.4e-10 68.2 30 83.3
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 6.4e-10 68.2 47 57.4
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 8.4e-10 67.8 47 57.4
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 1.1e-09 67.4 34 73.5
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 1.1e-09 67.4 45 57.8
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 1.9e-09 66.6 31 83.9
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 1.9e-09 66.6 31 83.9
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 3.2e-09 65.9 29 86.2
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 3.2e-09 65.9 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 1.2e-08 63.9 77 44.2
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 1.2e-08 63.9 35 74.3
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 4.6e-08 62.0 29 75.9
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 7.9e-08 61.2 33 69.7
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 3.3e-06 55.8 45 48.9


User provided reference genes

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