Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 1.2e-72 276.6 149 100.0
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 5.0e-68 261.2 151 96.0
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 2.3e-60 235.7 125 92.0
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.5e-59 232.3 126 88.1
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 4.3e-59 231.5 149 83.2
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 5.6e-59 231.1 125 90.4
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 5.6e-59 231.1 125 90.4
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 8.0e-58 227.3 123 86.2
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.0e-57 226.9 126 85.7
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.8e-57 226.1 127 85.8
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 8.9e-57 223.8 126 84.1
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 1.3e-55 219.9 126 82.5
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 2.9e-55 218.8 124 83.9
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 1.4e-54 216.5 127 77.2
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 3.2e-54 215.3 126 79.4
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 1.6e-53 213.0 125 79.2
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 2.7e-53 212.2 124 80.6
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.7e-52 209.5 126 76.2
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 6.6e-52 207.6 118 81.4
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.1e-51 206.8 128 77.3
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 1.1e-51 206.8 128 76.6
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 2.5e-51 205.7 126 76.2
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 5.6e-51 204.5 150 67.3
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 5.6e-51 204.5 125 77.6
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 7.3e-51 204.1 128 75.0
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 7.3e-51 204.1 127 76.4
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 2.1e-50 202.6 125 76.0
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 3.6e-50 201.8 117 81.2
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 3.6e-50 201.8 124 75.8
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 8.0e-50 200.7 118 78.8
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 1.1e-49 200.3 118 78.8
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 1.4e-49 199.9 128 72.7
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 1.8e-49 199.5 125 74.4
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 2.3e-49 199.1 125 76.0
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 4.0e-49 198.4 128 73.4
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 5.2e-49 198.0 103 88.3
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 6.8e-49 197.6 127 73.2
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 6.8e-49 197.6 128 71.1
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 8.9e-49 197.2 127 72.4
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 8.9e-49 197.2 120 74.2
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 3.4e-48 195.3 123 76.4
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 3.4e-48 195.3 128 70.3
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 4.4e-48 194.9 121 75.2
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 9.8e-48 193.7 130 72.3
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 9.8e-48 193.7 126 71.4
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.3e-47 193.4 125 74.4
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 1.3e-47 193.4 125 74.4
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 1.3e-47 193.4 127 73.2
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 2.2e-47 192.6 128 71.1
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.1e-46 190.3 125 72.8
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.9e-46 189.5 128 68.0
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 1.9e-46 189.5 121 74.4
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 5.4e-46 188.0 128 67.2
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 2.7e-45 185.7 120 71.7
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 4.6e-45 184.9 128 68.8
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 6.0e-45 184.5 117 73.5
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 7.8e-45 184.1 121 71.1
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 1.0e-44 183.7 127 70.9
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.0e-44 183.7 118 71.2
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 1.3e-44 183.3 122 68.9
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 1.7e-44 183.0 123 68.3
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 2.3e-44 182.6 125 68.8
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 3.9e-44 181.8 118 72.0
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.9e-44 181.8 119 68.9
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 3.9e-44 181.8 169 55.0
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 5.0e-44 181.4 119 68.9
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 5.0e-44 181.4 119 68.9
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 1.1e-43 180.3 118 69.5
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 1.5e-43 179.9 108 76.9
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 3.6e-42 175.3 117 69.2
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 4.7e-42 174.9 118 68.6
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 4.7e-42 174.9 128 65.6
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 1.1e-41 173.7 110 69.1
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 1.4e-41 173.3 118 67.8
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 3.1e-41 172.2 118 66.9
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 75.5
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 75.5
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 76.5
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 76.5
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 76.5
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 76.5
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 4.0e-41 171.8 102 76.5
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 4.0e-41 171.8 127 65.4
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 6.8e-41 171.0 118 64.4
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 8.9e-41 170.6 118 66.9
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 1.2e-40 170.2 110 70.0
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.5e-40 169.9 102 74.5
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 2.0e-40 169.5 102 74.5
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 2.6e-40 169.1 102 73.5
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 2.6e-40 169.1 102 74.5
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 2.6e-40 169.1 120 65.0
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 5.8e-40 167.9 102 73.5
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 5.8e-40 167.9 102 73.5
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 7.5e-40 167.5 102 72.5
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 7.5e-40 167.5 119 63.0
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 7.5e-40 167.5 104 75.0
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 7.5e-40 167.5 104 75.0
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 9.9e-40 167.2 110 67.3
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 1.7e-39 166.4 121 64.5
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 2.9e-39 165.6 102 71.6
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 3.7e-39 165.2 102 72.5
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 3.7e-39 165.2 110 65.5
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 6.4e-39 164.5 127 62.2
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 8.3e-39 164.1 127 61.4
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.1e-38 163.7 174 49.4
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 2.4e-38 162.5 104 72.1
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 9.2e-38 160.6 98 72.4
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 1.7e-36 156.4 118 61.0
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 6.6e-36 154.5 102 69.6
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 6.6e-36 154.5 105 69.5
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 6.6e-36 154.5 120 59.2
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 5.6e-35 151.4 87 80.5
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.1e-34 149.4 119 60.5
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.5e-32 143.3 84 77.4
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 2.6e-32 142.5 113 61.9
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 5.6e-27 124.8 83 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 7.3e-27 124.4 101 55.4
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 7.3e-27 124.4 97 52.6
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 1.5e-24 116.7 61 86.9
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 9.9e-24 114.0 108 48.1
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 1.3e-23 113.6 97 53.6
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 6.0e-21 104.8 98 52.0
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 6.0e-21 104.8 61 75.4
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.3e-20 102.8 61 75.4
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.8e-18 95.9 61 70.5
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 6.2e-18 94.7 64 68.8
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 9.0e-17 90.9 86 54.7
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 9.0e-17 90.9 85 50.6
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 7.6e-16 87.8 57 70.2
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 2.2e-15 86.3 68 61.8
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.9e-14 83.2 68 55.9
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 9.3e-14 80.9 65 61.5
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.0e-12 77.4 49 71.4
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 8.7e-12 74.3 52 63.5
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.3e-10 70.5 48 62.5
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 1.8e-09 66.6 101 30.7
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 9.0e-09 64.3 96 35.4
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 4.2e-06 55.5 33 69.7


User provided reference genes

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