Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 7.1e-105 384.0 205 100.0
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 2.7e-104 382.1 205 99.5
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.3e-98 363.2 231 87.0
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.6e-91 339.0 205 88.8
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.7e-90 336.3 216 86.6
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.4e-89 332.4 216 85.6
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.3e-74 283.5 202 76.7
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.4e-74 280.8 192 77.6
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 4.2e-73 278.5 185 81.6
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 7.1e-73 277.7 192 76.0
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.3e-71 273.5 202 75.7
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.3e-71 273.5 192 77.1
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.8e-71 273.1 205 73.2
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 8.7e-71 270.8 200 73.0
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 8.7e-71 270.8 192 74.5
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.9e-70 269.6 192 76.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 5.6e-70 268.1 188 77.1
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 7.4e-70 267.7 198 73.2
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.3e-69 266.9 198 72.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.1e-69 266.2 192 72.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.8e-69 265.8 192 74.0
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 3.7e-69 265.4 198 74.2
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 3.7e-69 265.4 188 75.0
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 6.2e-69 264.6 192 74.0
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 8.1e-69 264.2 189 74.6
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.4e-68 263.5 192 72.9
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.8e-68 263.1 191 74.3
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.4e-68 262.7 192 72.4
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.1e-68 262.3 196 75.0
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 4.0e-68 261.9 202 70.8
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 6.9e-68 261.2 203 69.5
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 6.9e-68 261.2 204 69.6
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.5e-67 260.0 198 71.2
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.0e-67 259.6 197 69.5
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.4e-67 258.8 185 74.1
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.4e-67 258.8 198 69.7
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 4.5e-67 258.5 199 69.8
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.5e-67 258.5 196 71.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 5.8e-67 258.1 192 73.4
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.0e-66 257.3 187 72.2
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.0e-66 257.3 182 75.8
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.7e-66 256.5 204 68.6
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.7e-66 256.5 192 71.4
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.7e-66 256.5 199 69.8
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.2e-66 256.1 195 72.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.2e-66 256.1 190 71.6
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 4.9e-66 255.0 196 70.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.9e-66 255.0 196 70.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 6.5e-66 254.6 197 71.6
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 8.4e-66 254.2 199 67.8
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-65 253.8 193 70.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.4e-65 253.4 188 70.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.4e-65 253.4 193 72.5
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.4e-65 253.4 187 71.7
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 2.5e-65 252.7 194 70.1
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.2e-65 252.3 190 71.1
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 4.2e-65 251.9 196 69.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 5.5e-65 251.5 197 72.1
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 9.3e-65 250.8 192 69.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.6e-64 250.0 198 68.2
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 7.9e-64 247.7 198 69.2
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 7.9e-64 247.7 194 69.6
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 7.9e-64 247.7 192 71.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.0e-63 247.3 196 70.9
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.8e-63 246.5 195 69.2
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.8e-63 246.5 195 69.2
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.8e-63 246.5 195 69.2
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.3e-63 246.1 188 71.8
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 6.7e-63 244.6 186 71.0
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 8.7e-63 244.2 184 70.7
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.1e-62 243.8 227 61.2
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 3.3e-62 242.3 178 74.2
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.6e-61 240.0 194 69.6
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.6e-61 240.0 210 66.2
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 2.1e-61 239.6 210 65.2
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 8.2e-61 237.7 189 69.3
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.4e-60 236.1 203 67.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.1e-60 235.3 195 67.2
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.1e-60 235.3 179 70.9
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 6.9e-60 234.6 187 69.5
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.0e-59 233.0 187 69.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-59 233.0 208 62.5
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.0e-59 233.0 196 67.3
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.0e-59 233.0 204 67.2
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.0e-58 230.7 195 64.6
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 1.1e-57 227.3 189 66.1
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.9e-57 226.5 192 65.1
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.1e-56 223.0 192 64.6
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.1e-56 223.0 195 65.6
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.8e-55 219.9 181 66.9
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 8.7e-55 217.6 198 64.1
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.5e-54 216.9 205 62.0
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.9e-54 216.5 159 71.7
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.7e-54 214.9 196 62.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 1.6e-53 213.4 240 55.0
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.8e-53 212.6 205 58.0
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.4e-52 210.3 173 64.2
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 9.1e-52 207.6 151 70.2
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.2e-51 207.2 161 66.5
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.6e-51 206.1 204 59.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 7.7e-51 204.5 177 61.6
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.8e-50 202.2 150 73.3
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.5e-50 201.4 153 71.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.4e-49 200.3 153 71.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 2.6e-46 189.5 192 58.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 3.3e-46 189.1 122 78.7
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 2.2e-45 186.4 173 60.7
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 6.3e-45 184.9 122 75.4
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 2.4e-44 183.0 120 80.0
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.9e-44 181.4 193 58.0
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.9e-41 173.3 114 72.8
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.9e-41 173.3 151 66.2
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.5e-41 172.9 137 70.1
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 9.4e-41 171.0 123 70.7
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.9e-33 146.7 122 66.4
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 8.8e-31 137.9 113 65.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 5.7e-30 135.2 196 40.3
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.7e-30 134.4 92 77.2
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.8e-29 132.1 109 61.5
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.8e-29 132.1 92 76.1
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.1e-28 131.0 160 43.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.4e-28 130.6 92 75.0
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.5e-27 125.9 121 55.4
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 3.8e-26 122.5 113 61.1
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.5e-26 121.3 99 65.7
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.5e-25 120.6 151 49.7
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.9e-25 120.2 186 38.7
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 8.0e-24 114.8 68 86.8
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 7.5e-22 108.2 151 48.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.5e-19 99.0 78 65.4
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.7e-18 97.1 115 41.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.3e-18 96.7 142 38.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 3.8e-18 95.9 82 57.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 2.5e-17 93.2 68 67.6
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.4e-15 87.4 67 70.1
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 5.0e-10 68.9 82 47.6
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 1.0e-07 61.2 63 57.1


User provided reference genes

Program Settings