Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g028840 Solanum pennellii HOM05D007931 ORTHO05D010331 2.1e-64 248.8 124 100.0
Solyc11g068410.1 Solanum lycopersicum HOM05D007931 ORTHO05D010331 1.1e-25 120.2 73 80.8
Nitab4.5_0005181g0020 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.7e-22 109.0 76 73.7
Nitab4.5_0008942g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.0e-21 107.1 75 76.0
Nitab4.5_0008257g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.2e-21 105.9 73 74.0
Nitab4.5_0001840g0090 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.9e-20 102.8 119 52.1
Nitab4.5_0002433g0100 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.2e-20 102.1 73 71.2
Solyc02g084031.1 Solanum lycopersicum HOM05D007931 ORTHO05D000006 3.2e-20 102.1 102 63.7
Nitab4.5_0003766g0040 Nicotiana tabacum HOM05D007931 ORTHO05D010331 7.2e-20 100.9 67 77.6
Nitab4.5_0007096g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 7.2e-20 100.9 70 74.3
Nitab4.5_0003063g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.6e-19 99.8 76 71.1
Nitab4.5_0013264g0010 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.1e-19 99.4 73 69.9
PGSC0003DMG400040885 Solanum tuberosum HOM05D007931 ORTHO05D010331 2.7e-19 99.0 73 74.0
PGSC0003DMG400030025 Solanum tuberosum HOM05D007931 ORTHO05D010331 8.0e-19 97.4 73 64.4
Nitab4.5_0002837g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 4.0e-18 95.1 75 68.0
Nitab4.5_0004512g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.5e-17 93.2 75 65.3
Nitab4.5_0000265g0090 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.6e-17 92.4 74 62.2
Nitab4.5_0003161g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.7e-16 89.7 77 55.8
Sopen02g012250 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-16 88.6 100 51.0
Sopen10g023470 Solanum pennellii HOM05D007931 ORTHO05D010331 4.8e-16 88.2 75 58.7
Nitab4.5_0001005g0120 Nicotiana tabacum HOM05D007931 ORTHO05D010331 6.3e-16 87.8 62 72.6
Nitab4.5_0005843g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 6.3e-16 87.8 81 55.6
Nitab4.5_0002199g0040 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.1e-15 85.5 77 51.9
Solyc08g067650.2 Solanum lycopersicum HOM05D007931 ORTHO05D010331 4.1e-15 85.1 75 56.0
PGSC0003DMG400030140 Solanum tuberosum HOM05D007931 ORTHO05D010331 4.5e-14 81.6 62 61.3
Nitab4.5_0001297g0070 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.9e-14 81.3 66 62.1
Nitab4.5_0000075g0220 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.3e-13 80.1 74 56.8
Nitab4.5_0000128g0350 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.5e-12 76.6 67 56.7
Sopen08g021590 Solanum pennellii HOM05D007931 ORTHO05D010331 3.2e-12 75.5 86 44.2
Nitab4.5_0000016g0590 Nicotiana tabacum HOM05D007931 ORTHO05D010331 6.1e-11 71.2 106 41.5
PGSC0003DMG400014334 Solanum tuberosum HOM05D007931 ORTHO05D010331 3.0e-10 68.9 70 50.0
Nitab4.5_0003727g0050 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.2e-10 68.2 91 42.9
Nitab4.5_0005933g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.2e-10 68.2 59 61.0
Nitab4.5_0006590g0040 Nicotiana tabacum HOM05D007931 ORTHO05D010331 8.8e-10 67.4 67 50.7
Nitab4.5_0010531g0070 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.5e-09 66.6 70 54.3
CANSAT54G0625 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-09 65.5 47 59.6
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-09 65.1 49 55.1
Solyc04g063330.1 Solanum lycopersicum HOM05D007931 ORTHO05D010331 4.4e-09 65.1 57 50.9
Nitab4.5_0003244g0010 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.7e-09 64.7 60 48.3
Solyc02g032630.2 Solanum lycopersicum HOM05D007931 ORTHO05D010331 5.7e-09 64.7 57 57.9
Nitab4.5_0001238g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 7.5e-09 64.3 59 52.5
Nitab4.5_0002082g0020 Nicotiana tabacum HOM05D007931 ORTHO05D010331 9.8e-09 63.9 74 40.5
Nitab4.5_0000760g0010 Nicotiana tabacum HOM05D007931 ORTHO05D010331 1.7e-08 63.2 65 43.1
Solyc04g010150.1 Solanum lycopersicum HOM05D007931 ORTHO05D010331 1.7e-08 63.2 63 50.8
Peaxi162Scf00457g00055 Petunia axillaris HOM05D007931 ORTHO05D010331 2.8e-08 62.4 58 51.7
Nitab4.5_0000871g0010 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.7e-08 62.0 111 40.5
Nitab4.5_0004037g0020 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.7e-08 62.0 64 48.4
CANSAT35G0498 Cannabis sativa HOM05D000003 ORTHO05D000004 4.9e-08 61.6 72 44.4
Nitab4.5_0003434g0110 Nicotiana tabacum HOM05D007931 ORTHO05D010331 4.9e-08 61.6 65 43.1
Nitab4.5_0002239g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 6.3e-08 61.2 77 41.6
Nitab4.5_0000055g0280 Nicotiana tabacum HOM05D007931 ORTHO05D010331 8.3e-08 60.8 57 54.4
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 47 55.3
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 47 57.4
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.4e-07 59.3 48 56.2
Nitab4.5_0000132g0210 Nicotiana tabacum HOM05D007931 ORTHO05D010331 3.1e-07 58.9 61 44.3
Atru.chr6.785 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-07 58.5 47 51.1
Nitab4.5_0000780g0060 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.4e-07 58.2 70 45.7
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 5.4e-07 58.2 64 48.4
BolC8t52842H Brassica oleracea HOM05D000003 ORTHO05D000925 9.2e-07 57.4 118 35.6
CANSAT64G0588 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.0 46 54.3
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 1.2e-06 57.0 47 53.2
Atru.chr13.1582 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 48 52.1
Atru.chr6.1233 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-06 56.6 122 30.3
CANSAT78G0208 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 75 37.3
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-06 56.2 46 54.3
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 72 40.3
Peaxi162Scf00004g00093 Petunia axillaris HOM05D007931 ORTHO05D010331 2.7e-06 55.8 76 43.4
Rhsim06G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.7e-06 55.8 64 43.8
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 55.5 47 46.8
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 55.5 49 53.1
CANSAT64G2141 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.5 47 51.1
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-06 55.1 48 47.9
CANSAT11G0243 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.1 47 48.9
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 4.5e-06 55.1 49 46.9
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-06 55.1 47 46.8
CANSAT78G2022 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-06 54.7 47 48.9
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 5.9e-06 54.7 47 46.8
QL03p065273 Quercus lobata HOM05D000003 ORTHO05D000004 5.9e-06 54.7 58 46.6
Atru.chr2.2049 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-06 54.3 71 39.4
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-06 54.3 47 51.1
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.7e-06 54.3 47 44.7
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 7.7e-06 54.3 47 44.7
Lj2g0021189 Lotus japonicus HOM05D000003 ORTHO05D000004 7.7e-06 54.3 49 46.9
Rhsim06G0137800 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.7e-06 54.3 155 25.2


User provided reference genes

Program Settings