Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 6.8e-188 660.6 355 100.0
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.3e-183 646.4 355 96.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 8.9e-164 580.5 352 89.2
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 5.3e-132 474.9 372 76.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.5e-131 471.9 356 78.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.3e-127 460.3 358 74.3
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.9e-119 432.2 366 71.9
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.3e-101 374.0 368 63.6
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.2e-98 363.2 376 62.0
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 1.9e-97 360.1 379 62.8
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 5.1e-95 352.1 382 60.7
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.1e-92 342.4 379 60.9
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.0e-91 340.1 380 62.1
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 8.0e-88 328.2 386 58.0
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.3e-87 326.6 380 58.7
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.0e-87 326.2 412 55.1
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 6.7e-87 325.1 376 58.2
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 2.0e-86 323.6 376 57.2
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.7e-86 322.0 372 59.7
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.1e-84 317.8 374 58.6
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.4e-84 316.6 376 59.0
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.2e-82 310.1 383 54.6
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 5.0e-82 308.9 374 55.3
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.5e-82 308.1 362 58.3
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.5e-81 307.4 364 55.8
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 2.5e-81 306.6 386 54.4
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 2.5e-81 306.6 384 56.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.1e-80 303.5 369 55.8
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.1e-80 303.5 370 55.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 4.7e-80 302.4 376 54.8
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.3e-79 300.1 376 56.4
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.3e-79 300.1 369 54.5
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 5.2e-79 298.9 400 53.8
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.5e-78 297.4 372 54.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 3.4e-78 296.2 365 55.6
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.7e-77 293.9 372 54.8
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.7e-77 293.9 372 54.8
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.8e-77 293.1 382 54.5
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.1e-76 289.7 377 54.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.1e-76 289.7 379 55.9
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 9.1e-76 288.1 448 48.7
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.0e-75 287.0 376 55.1
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.0e-75 287.0 377 54.1
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 5.0e-74 282.3 379 54.1
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 5.0e-74 282.3 368 52.2
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.1e-73 281.2 373 55.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 4.2e-73 279.3 395 53.9
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.5e-73 278.9 374 53.2
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.6e-72 276.2 373 54.4
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 8.0e-72 275.0 363 52.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.0e-71 274.6 386 53.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.0e-71 273.1 389 51.9
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.2e-70 271.2 387 51.4
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.5e-70 270.8 370 53.5
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 4.4e-70 269.2 344 54.4
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 4.4e-70 269.2 344 54.1
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 3.7e-69 266.2 368 49.5
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 4.8e-69 265.8 381 50.1
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 8.3e-69 265.0 394 51.0
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.1e-68 264.6 366 49.2
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.4e-68 264.2 388 50.8
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 4.1e-68 262.7 335 56.4
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 9.1e-68 261.5 288 56.6
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 9.1e-68 261.5 381 48.8
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.6e-67 260.8 378 51.6
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.7e-67 260.0 365 51.2
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 3.5e-67 259.6 368 52.4
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.9e-66 256.5 347 52.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.0e-66 255.8 372 49.7
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 8.6e-66 255.0 372 51.6
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-65 254.6 363 49.6
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.9e-65 253.8 367 53.1
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.5e-65 253.4 370 49.5
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 3.3e-65 253.1 382 50.0
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 9.5e-65 251.5 373 50.1
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.8e-64 250.0 371 49.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.6e-64 249.6 361 52.6
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.8e-63 247.3 375 48.3
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 2.3e-63 246.9 370 49.7
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.0e-63 246.1 360 52.8
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.2e-63 245.7 365 48.2
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 5.2e-63 245.7 374 52.1
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 6.8e-63 245.4 347 49.9
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 6.8e-63 245.4 377 47.7
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-62 244.6 439 44.0
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.3e-61 241.1 336 51.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.7e-61 239.6 365 47.4
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.1e-60 238.0 366 46.2
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.1e-60 236.1 359 49.0
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.0e-59 233.8 359 48.7
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 3.5e-59 233.0 370 50.0
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 5.9e-59 232.3 370 50.0
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-58 230.7 361 48.2
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.9e-58 229.6 373 49.3
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-57 228.0 444 42.1
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.9e-57 227.3 311 50.8
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.3e-57 226.5 368 50.0
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.3e-57 226.5 326 50.0
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 3.3e-57 226.5 256 58.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 9.5e-57 224.9 364 47.5
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 9.5e-57 224.9 373 47.7
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.1e-56 223.8 375 48.0
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 3.6e-56 223.0 364 50.3
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 3.6e-56 223.0 367 43.3
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 3.1e-55 219.9 363 50.4
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 5.2e-55 219.2 327 46.5
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 8.9e-55 218.4 364 49.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.5e-54 217.6 376 45.7
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.5e-54 217.6 364 49.5
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 3.4e-54 216.5 364 49.5
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.7e-53 213.0 368 45.7
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.2e-52 209.9 322 48.8
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.2e-51 208.0 362 44.2
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.2e-51 208.0 345 49.0
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.7e-51 206.8 364 48.4
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.0e-50 204.9 363 45.7
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.7e-50 204.1 331 47.1
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 3.9e-50 203.0 369 43.6
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 4.3e-49 199.5 368 43.5
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.1e-48 197.2 376 46.3
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 4.0e-47 193.0 328 43.0
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 5.2e-47 192.6 346 43.1
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.2e-46 191.4 371 41.5
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 3.4e-46 189.9 340 44.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 5.8e-46 189.1 363 44.1
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.9e-44 184.1 373 39.4
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 6.0e-43 179.1 333 43.8
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.0e-42 178.3 329 45.0
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.0e-42 176.8 231 55.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 3.9e-42 176.4 351 40.7
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 8.6e-42 175.3 367 41.4
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 8.6e-42 175.3 185 64.3
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 2.1e-40 170.6 304 43.4
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.8e-40 170.2 224 54.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.8e-40 170.2 360 40.8
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 2.8e-40 170.2 386 39.6
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.1e-39 168.3 326 42.9
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 5.2e-39 166.0 328 40.9
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 6.8e-39 165.6 364 39.3
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.0e-38 164.1 359 42.6
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.6e-38 163.7 373 39.7
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 7.6e-38 162.2 300 44.0
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.2e-37 160.6 309 43.7
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.9e-37 159.5 391 37.1
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.4e-36 157.1 309 43.0
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 3.2e-36 156.8 333 39.6
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 5.4e-36 156.0 388 36.3
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.7e-35 153.7 377 37.1
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 3.5e-35 153.3 254 42.5
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.7e-34 151.0 274 42.7
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.7e-34 151.0 370 38.6
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 6.6e-34 149.1 340 36.8
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 8.6e-34 148.7 376 37.8
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 2.1e-32 144.1 263 46.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 1.3e-29 134.8 210 48.6
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 6.4e-29 132.5 240 45.8
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 5.4e-28 129.4 322 37.9
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 3.5e-27 126.7 211 46.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 3.5e-27 126.7 211 46.4
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 3.0e-26 123.6 320 35.6
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 3.0e-26 123.6 320 35.6
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.3e-25 119.8 206 46.6
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 5.6e-25 119.4 129 55.8
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 2.8e-24 117.1 141 58.9
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.1e-24 115.5 324 36.4
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.1e-24 115.5 324 36.4
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-20 105.1 207 45.4
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 7.9e-19 99.0 243 35.0
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 8.7e-18 95.5 297 32.0
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.7e-18 95.5 347 35.2
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.2e-11 75.1 351 30.8
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 1.2e-11 75.1 418 27.5
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.8e-10 71.2 131 39.7
PSO700G0244 Papaver somniferum HOM05D065651 ORTHO05D004262 6.7e-10 69.3 271 30.6
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.3e-09 67.0 56 60.7
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.4e-09 65.9 56 58.9
PSO170G2947 Papaver somniferum HOM05D065651 ORTHO05D004262 9.6e-09 65.5 250 31.6
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 1.6e-08 64.7 328 29.3
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.1e-08 62.4 68 48.5
AagrBONN_evm.TU.Sc2ySwM_362.2718 Anthoceros agrestis HOM05D003676 ORTHO05D004262 1.1e-07 62.0 152 37.5
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.0e-07 60.1 117 50.4
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 1.2e-06 58.5 109 39.4


User provided reference genes

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