Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 3.4e-149 531.6 258 100.0
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 4.7e-146 521.2 256 98.4
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 1.8e-113 412.9 204 96.6
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 4.7e-106 388.3 205 91.2
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 2.4e-102 375.9 205 88.8
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 8.1e-90 334.3 205 77.1
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 3.1e-89 332.4 203 77.3
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 4.0e-89 332.0 203 76.4
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 1.5e-88 330.1 203 76.8
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 1.5e-88 330.1 204 75.0
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 2.6e-88 329.3 205 75.6
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 7.6e-88 327.8 203 74.9
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 4.9e-87 325.1 175 90.9
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 8.4e-87 324.3 204 72.1
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.1e-86 323.9 204 72.1
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 2.4e-86 322.8 204 74.0
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 2.4e-86 322.8 205 73.7
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.2e-86 322.4 204 71.6
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 3.2e-86 322.4 222 67.6
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 3.2e-86 322.4 204 73.0
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 9.2e-86 320.9 205 74.6
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 9.2e-86 320.9 204 73.5
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 3.5e-85 318.9 204 72.1
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 4.6e-85 318.5 203 72.9
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 6.0e-85 318.2 204 71.6
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 7.8e-85 317.8 216 69.0
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.0e-84 317.4 204 72.5
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.0e-84 317.4 208 71.2
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.3e-84 317.0 204 71.6
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.3e-84 316.2 204 71.1
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 5.1e-84 315.1 204 69.6
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 8.6e-84 314.3 204 70.1
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.9e-83 313.2 207 68.6
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.3e-83 312.4 204 70.6
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 3.3e-83 312.4 204 69.1
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 1.2e-82 310.5 203 70.9
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 2.1e-82 309.7 204 68.6
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 4.7e-82 308.5 204 68.1
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 8.1e-82 307.8 204 67.6
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.4e-81 307.0 204 69.1
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 3.1e-81 305.8 204 67.6
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 5.2e-81 305.1 204 67.6
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 6.8e-81 304.7 203 67.0
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 1.5e-80 303.5 203 68.5
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 2.6e-80 302.8 204 67.6
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 7.6e-80 301.2 232 59.5
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 2.2e-79 299.7 204 66.2
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 2.9e-79 299.3 204 70.1
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 3.8e-79 298.9 194 69.1
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 6.4e-79 298.1 203 69.0
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.4e-78 297.0 204 66.2
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 1.4e-78 297.0 204 67.2
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 3.2e-78 295.8 204 66.7
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 4.2e-78 295.4 204 65.2
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 4.2e-78 295.4 205 66.8
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 7.1e-78 294.7 204 65.7
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 9.3e-78 294.3 204 65.7
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.2e-77 293.9 203 66.0
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 1.2e-77 293.9 204 65.7
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.6e-77 293.5 184 75.0
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 2.1e-77 293.1 211 64.5
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 2.1e-77 293.1 211 64.5
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 3.5e-77 292.4 204 64.7
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 4.6e-77 292.0 201 66.7
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 4.6e-77 292.0 204 65.2
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 6.0e-77 291.6 203 65.5
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 6.0e-77 291.6 209 66.0
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 2.3e-76 289.7 204 64.7
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 2.3e-76 289.7 204 64.7
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 5.1e-76 288.5 205 66.3
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 8.7e-76 287.7 206 66.5
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 8.7e-76 287.7 204 66.7
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 3.6e-74 282.3 201 66.2
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 7.6e-72 274.6 211 62.1
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 3.8e-71 272.3 202 61.9
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 8.4e-71 271.2 182 68.7
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 3.2e-70 269.2 253 55.7
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 9.3e-70 267.7 176 68.8
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 1.3e-68 263.8 206 61.7
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 3.0e-68 262.7 206 61.7
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 1.9e-67 260.0 164 72.6
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 7.3e-67 258.1 185 64.9
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 1.1e-65 254.2 183 65.0
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 7.6e-64 248.1 161 71.4
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 5.5e-62 241.9 163 69.9
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 7.1e-62 241.5 165 67.3
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.5e-61 239.2 215 51.2
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.5e-61 239.2 215 51.2
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 8.7e-60 234.6 145 73.8
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 1.9e-59 233.4 207 52.7
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 6.2e-58 228.4 159 68.6
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 8.1e-58 228.0 187 58.3
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 4.0e-57 225.7 215 50.7
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 8.4e-55 218.0 212 50.0
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 4.6e-53 212.2 146 67.1
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.9e-51 206.8 149 63.1
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.8e-50 203.0 146 60.3
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 2.6e-48 196.4 148 60.1
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 5.9e-48 195.3 168 56.5
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 8.4e-47 191.4 122 74.6
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 2.7e-45 186.4 214 44.4
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 4.3e-43 179.1 121 66.9
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 7.2e-38 161.8 106 67.0
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 2.7e-37 159.8 106 66.0
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.0e-35 153.7 145 55.2
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 5.7e-35 152.1 152 49.3
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 2.9e-31 139.8 168 41.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 3.8e-31 139.4 156 42.9
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 3.2e-30 136.3 209 35.4
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 6.3e-26 122.1 174 39.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 2.6e-24 116.7 277 27.4
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 1.1e-22 111.3 62 83.9
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 1.9e-22 110.5 167 34.7
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.9e-22 110.5 113 50.4
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 4.1e-17 92.8 59 72.9
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 9.8e-11 71.6 63 50.8


User provided reference genes

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