Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 1.1e-162 577.4 299 100.0
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 2.4e-138 496.5 266 96.6
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 3.2e-127 459.5 268 91.8
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 4.4e-84 316.2 269 65.4
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 6.8e-77 292.4 269 57.2
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 1.7e-75 287.7 276 56.5
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 3.2e-74 283.5 267 57.3
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 7.8e-73 278.9 272 58.8
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 1.9e-71 274.2 269 57.6
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 1.6e-70 271.2 266 59.4
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 8.9e-69 265.4 267 54.3
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 1.5e-68 264.6 267 53.9
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 2.6e-68 263.8 277 53.1
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 1.3e-67 261.5 274 51.1
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 1.9e-66 257.7 273 52.7
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 2.4e-66 257.3 273 52.0
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 7.1e-66 255.8 151 84.8
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.3e-64 251.5 205 60.0
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 3.0e-64 250.4 205 60.0
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 5.1e-64 249.6 152 82.2
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 5.1e-64 249.6 268 51.9
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 5.1e-64 249.6 267 51.3
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.5e-63 248.1 152 81.6
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 4.3e-63 246.5 269 50.6
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 9.6e-63 245.4 275 52.7
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 1.6e-62 244.6 273 50.9
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 1.6e-62 244.6 152 78.9
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 4.8e-62 243.0 268 53.0
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 8.1e-62 242.3 271 51.3
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 1.8e-61 241.1 268 48.5
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 3.1e-61 240.4 263 52.5
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 6.9e-61 239.2 269 51.3
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 1.5e-60 238.0 265 51.7
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 2.6e-60 237.3 268 47.4
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 5.8e-60 236.1 275 50.5
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 9.9e-60 235.3 272 50.7
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 2.2e-59 234.2 275 50.2
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 1.1e-58 231.9 244 57.0
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 1.4e-58 231.5 273 52.0
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 7.1e-58 229.2 266 47.4
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 9.3e-58 228.8 265 49.4
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 9.3e-58 228.8 267 50.6
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 4.6e-57 226.5 267 45.7
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 4.6e-57 226.5 270 47.8
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 1.0e-56 225.3 278 45.3
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 3.9e-56 223.4 270 45.9
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 3.9e-56 223.4 266 47.0
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 3.9e-56 223.4 176 64.8
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 3.9e-56 223.4 268 45.9
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 8.7e-56 222.2 270 44.8
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 1.5e-55 221.5 272 46.7
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 1.5e-55 221.5 302 43.4
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 3.3e-55 220.3 265 49.1
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 3.3e-55 220.3 234 52.6
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 7.3e-55 219.2 238 55.9
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 8.1e-54 215.7 264 47.7
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 1.1e-53 215.3 258 46.5
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 6.9e-53 212.6 280 47.1
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 8.4e-51 205.7 265 45.7
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 8.4e-51 205.7 267 46.1
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 1.9e-50 204.5 266 44.7
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 2.4e-50 204.1 266 44.4
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 4.2e-50 203.4 268 45.1
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 4.2e-50 203.4 266 44.4
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 2.1e-46 191.0 225 50.2
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 4.0e-45 186.8 279 41.6
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 6.5e-43 179.5 274 42.0
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 8.4e-43 179.1 267 41.6
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.5e-42 177.6 148 59.5
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 1.2e-41 175.3 234 41.5
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 2.8e-38 164.1 246 40.7
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 9.0e-37 159.1 233 41.6
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 1.2e-36 158.7 222 44.6
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 7.6e-36 156.0 268 39.2
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 6.5e-35 152.9 194 45.9
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 2.7e-33 147.5 194 45.4
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 6.7e-32 142.9 202 41.6
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.3e-31 140.6 198 43.9
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 9.7e-31 139.0 214 43.0
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.1e-29 134.0 198 43.9
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 5.3e-29 133.3 214 42.1
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 1.3e-27 128.6 123 56.1
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 1.7e-27 128.3 204 42.2
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 2.5e-26 124.4 112 50.9
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 6.7e-24 116.3 194 37.6
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 1.1e-23 115.5 268 33.2
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 2.2e-22 111.3 115 53.0
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 8.2e-22 109.4 105 51.4
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 8.8e-16 89.4 73 54.8
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 9.7e-15 85.9 235 29.8
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.5e-10 71.2 161 25.5
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.5e-10 71.2 161 25.5
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.5e-10 71.2 161 25.5
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 2.5e-10 71.2 161 24.8
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 2.5e-10 71.2 164 25.0
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 4.7e-09 67.0 186 24.2
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 8.0e-09 66.2 242 25.6
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 1.0e-08 65.9 212 23.1
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 1.8e-08 65.1 180 23.9
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 1.8e-08 65.1 194 27.8
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 2.3e-08 64.7 164 22.6
ECA238G1378 Erigeron canadensis HOM05D007700 ORTHO05D009669 6.7e-08 63.2 35 85.7
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 1.1e-07 62.4 209 25.4
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 1.5e-07 62.0 233 23.6
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 1.5e-07 62.0 200 23.5
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 2.6e-07 61.2 195 24.6
CSS0049050 Camellia sinensis var. sinensis HOM05D007700 ORTHO05D009669 7.4e-07 59.7 35 77.1
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 7.4e-07 59.7 184 23.9
Rhsim02G0072100 Rhododendron simsii HOM05D007128 ORTHO05D009059 7.4e-07 59.7 139 28.1
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 9.7e-07 59.3 220 24.5
Sp3g31030 Schrenkiella parvula HOM05D007700 ORTHO05D009669 9.7e-07 59.3 35 74.3
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 2.2e-06 58.2 172 24.4
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 2.2e-06 58.2 193 27.5
SGA_v2.0_scaffold32G13356 Striga asiatica HOM05D005622 ORTHO05D002854 2.8e-06 57.8 99 29.3
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 3.7e-06 57.4 220 24.1
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 4.8e-06 57.0 146 23.3
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.8e-06 57.0 110 28.2
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 4.8e-06 57.0 196 23.5
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 4.8e-06 57.0 122 26.2
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 4.8e-06 57.0 313 22.0
Dinv26815 Davidia involucrata HOM05D000891 ORTHO05D000761 6.3e-06 56.6 215 26.5
CAN.G1081.5 Capsicum annuum HOM05D000058 ORTHO05D000255 8.2e-06 56.2 107 30.8
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 8.2e-06 56.2 221 26.2


User provided reference genes

Program Settings