Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 2.4e-310 1068.5 795 100.0
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 9.2e-302 1040.0 795 97.7
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 4.6e-245 851.7 795 77.1
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 4.8e-242 841.6 796 70.4
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.6e-221 773.5 808 67.6
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 6.8e-196 688.3 795 59.6
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 3.5e-168 596.3 796 52.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.9e-167 592.8 795 55.2
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 6.8e-164 582.0 795 57.2
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 8.4e-162 575.1 738 59.2
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.2e-160 571.2 768 55.1
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 6.0e-160 568.9 764 57.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 2.3e-159 567.0 796 58.2
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 2.3e-159 567.0 801 54.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 9.6e-158 561.6 797 55.1
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 2.7e-152 543.5 802 52.0
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.3e-151 541.2 794 58.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.1e-150 538.1 794 55.4
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.1e-150 538.1 750 56.9
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.3e-149 534.6 792 59.1
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.8e-149 533.5 804 56.0
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 6.9e-148 528.9 763 62.6
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 5.8e-147 525.8 798 58.5
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.0e-143 515.0 782 54.9
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.0e-143 515.0 796 50.3
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 4.3e-142 509.6 605 62.1
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 5.6e-142 509.2 832 48.7
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.3e-141 508.1 760 58.7
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 4.8e-141 506.1 790 55.1
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 4.0e-140 503.1 750 53.9
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 5.3e-140 502.7 803 59.0
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 5.3e-140 502.7 803 59.0
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 4.5e-139 499.6 746 52.9
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 4.5e-139 499.6 750 47.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.3e-138 498.0 778 53.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.9e-138 496.9 757 54.6
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 3.8e-138 496.5 746 52.5
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 8.4e-138 495.4 852 54.0
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.1e-137 495.0 789 51.7
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.4e-137 494.6 780 55.4
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.4e-137 494.6 792 53.4
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 5.5e-137 492.7 759 51.9
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 4.6e-136 489.6 794 54.7
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 7.9e-136 488.8 796 49.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.0e-135 488.4 805 56.5
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.3e-135 487.3 791 52.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 6.7e-135 485.7 763 63.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 8.7e-135 485.3 786 51.9
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.5e-134 484.6 794 52.3
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.3e-134 483.0 791 52.8
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 7.4e-134 482.3 800 50.2
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.6e-133 481.1 761 64.7
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 2.1e-133 480.7 794 48.9
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 8.2e-133 478.8 762 46.5
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 3.4e-131 473.4 787 53.5
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 4.5e-131 473.0 797 50.1
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 1.3e-130 471.5 804 52.0
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.1e-129 468.4 748 52.1
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.8e-127 461.1 805 47.3
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 2.3e-127 460.7 785 49.6
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 3.9e-127 459.9 764 52.9
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 3.9e-127 459.9 777 55.5
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.1e-127 459.5 786 54.2
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 9.7e-126 455.3 774 51.2
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 4.8e-125 453.0 780 52.7
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 6.3e-125 452.6 788 47.8
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.4e-124 451.4 807 46.1
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.1e-124 449.9 762 52.2
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 5.3e-124 449.5 786 50.1
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 6.9e-124 449.1 781 49.7
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.2e-123 448.4 786 50.1
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.5e-123 448.0 767 49.0
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.6e-123 447.2 764 51.0
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 3.4e-123 446.8 792 56.2
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 4.5e-123 446.4 788 47.1
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 2.9e-122 443.7 729 54.0
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 4.2e-121 439.9 751 53.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 4.2e-121 439.9 751 53.3
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 4.2e-121 439.9 791 53.9
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.1e-120 437.6 752 52.5
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.7e-120 437.2 758 52.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.5e-118 431.4 802 51.5
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 5.9e-115 419.5 799 45.3
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.9e-114 417.2 480 67.1
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.4e-113 414.8 804 51.7
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 4.2e-113 413.3 795 47.3
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.0e-111 408.7 791 49.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.8e-111 407.9 778 48.3
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.1e-108 398.7 798 45.9
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 4.1e-108 396.7 823 48.4
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 3.5e-107 393.7 746 49.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.7e-106 391.3 746 45.2
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 4.8e-101 373.2 791 42.9
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 4.8e-101 373.2 420 60.2
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 8.2e-101 372.5 796 43.0
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 5.0e-98 363.2 758 49.5
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.1e-92 344.0 793 41.4
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.6e-80 305.1 783 44.3
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.8e-79 301.6 748 37.7
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.0e-70 271.6 275 57.8
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.7e-69 268.5 758 31.0
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.6e-67 260.4 251 60.2
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.0e-66 259.2 773 39.7
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 6.6e-66 256.5 657 34.4
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 3.4e-62 244.2 190 75.3
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 8.3e-61 239.6 203 67.0
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 8.6e-58 229.6 806 28.0
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.1e-47 196.1 132 83.3
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 3.1e-47 194.5 536 48.5
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 8.4e-45 186.4 536 48.7
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.6e-43 182.2 773 32.7
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 5.6e-41 173.7 137 78.1
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 7.3e-41 173.3 524 52.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 9.9e-38 162.9 820 28.7
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 7.1e-36 156.8 123 74.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.3e-32 146.0 370 55.1
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-32 145.2 343 34.4
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 2.4e-31 141.7 178 53.4
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-28 132.9 185 53.5
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.6e-25 120.6 91 65.9
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 4.8e-24 117.5 180 49.4
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 7.1e-20 103.6 95 69.5
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.5e-17 95.9 127 47.2
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 3.3e-17 94.7 112 50.9
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 9.6e-17 93.2 89 56.2
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.8e-16 91.7 167 38.3
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 6.3e-16 90.5 79 68.4
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 6.3e-16 90.5 56 87.5
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 2.2e-13 82.0 81 56.8
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 5.0e-13 80.9 54 77.8
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.1e-12 79.7 134 39.6
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 9.7e-09 66.6 102 40.2
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 2.4e-07 62.0 52 71.2
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-06 59.7 47 70.2
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 1.5e-06 59.3 71 42.3
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.0e-06 58.9 150 34.7


User provided reference genes

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