Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.5e-90 336.3 178 100.0
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.8e-89 332.0 178 98.3
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 1.4e-80 303.1 178 89.3
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.2e-78 295.8 178 87.6
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.3e-75 286.6 157 96.2
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 3.6e-73 278.5 184 81.0
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.4e-70 267.7 167 85.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.7e-62 243.0 178 72.5
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.3e-61 237.3 178 68.0
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.2e-60 236.9 178 68.0
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.6e-60 236.5 178 68.0
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 3.9e-59 231.9 178 67.4
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 4.3e-58 228.4 178 67.4
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.6e-57 226.5 175 67.4
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 6.2e-57 224.6 172 65.7
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.1e-56 222.2 179 63.7
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 5.3e-56 221.5 177 65.5
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-55 220.3 179 63.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.2e-55 220.3 172 64.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.5e-55 219.9 178 62.9
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.6e-55 217.6 179 62.6
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.7e-54 216.5 163 68.1
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.2e-54 216.1 167 67.1
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.2e-54 216.1 166 69.9
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.2e-54 216.1 175 66.3
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 6.4e-54 214.5 178 63.5
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.1e-53 213.8 167 66.5
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.4e-53 213.4 167 66.5
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.9e-53 213.0 163 67.5
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 4.2e-53 211.8 179 64.2
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.3e-51 206.1 178 59.6
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 3.9e-51 205.3 171 63.2
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 3.9e-51 205.3 171 63.2
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 8.7e-51 204.1 179 60.9
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 5.6e-50 201.4 172 61.0
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 9.6e-50 200.7 177 60.5
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.6e-49 199.9 172 59.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 2.1e-49 199.5 171 61.4
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.8e-49 198.4 165 63.0
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 6.2e-49 198.0 175 58.9
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.4e-48 196.8 175 60.0
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.8e-48 196.4 156 66.0
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.4e-48 196.1 171 59.6
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 9.0e-48 194.1 163 63.2
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 7.6e-47 191.0 163 60.7
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 7.6e-47 191.0 192 55.7
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 9.9e-47 190.7 163 60.1
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.7e-46 189.9 153 66.7
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 3.8e-46 188.7 172 57.6
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.9e-46 188.3 165 61.2
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 6.4e-46 188.0 162 59.9
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.4e-45 186.8 162 60.5
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 3.2e-45 185.7 162 60.5
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 3.2e-45 185.7 165 58.8
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 5.5e-45 184.9 162 59.9
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 5.5e-45 184.9 162 59.9
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 1.6e-44 183.3 167 60.5
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 2.7e-44 182.6 162 57.4
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.5e-44 182.2 153 64.1
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.5e-44 182.2 153 64.1
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.5e-44 182.2 162 58.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 4.6e-44 181.8 167 56.3
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 6.0e-44 181.4 166 57.2
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 6.0e-44 181.4 166 57.2
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 7.9e-44 181.0 177 53.7
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.0e-43 180.6 178 55.1
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.3e-43 180.3 164 56.7
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.3e-43 179.5 162 57.4
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 2.3e-43 179.5 152 59.2
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 2.3e-43 179.5 177 55.9
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.0e-43 179.1 138 65.2
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.9e-43 178.7 155 59.4
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.1e-42 177.2 165 57.0
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-42 177.2 172 54.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 1.5e-42 176.8 162 54.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.5e-42 176.0 177 53.1
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 3.3e-42 175.6 178 55.6
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.3e-42 175.3 154 64.9
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 5.6e-42 174.9 173 52.6
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 7.4e-42 174.5 156 60.9
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.6e-41 173.3 153 59.5
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.6e-41 173.3 173 54.3
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 2.1e-41 172.9 163 58.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.8e-41 172.6 156 59.0
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.7e-41 172.2 141 63.1
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 3.7e-41 172.2 177 53.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 8.2e-41 171.0 187 51.9
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.4e-40 169.5 162 58.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.9e-40 167.9 146 61.6
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-39 167.2 162 56.2
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.2e-39 167.2 177 55.9
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.2e-39 167.2 162 56.2
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.5e-39 166.8 178 50.0
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.5e-39 166.8 147 59.9
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.0e-39 166.4 155 58.7
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 5.8e-39 164.9 129 69.0
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.8e-39 164.9 226 45.1
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 7.6e-39 164.5 177 48.6
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 7.6e-39 164.5 177 48.0
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.3e-38 163.7 165 51.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.7e-38 163.3 145 60.7
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.2e-38 162.9 129 65.1
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.9e-38 162.5 166 52.4
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 4.9e-38 161.8 165 51.5
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.1e-37 160.6 221 45.7
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.5e-37 159.5 145 60.7
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 3.2e-37 159.1 158 54.4
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 9.3e-37 157.5 164 50.6
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.6e-36 156.8 229 43.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 2.7e-36 156.0 156 53.2
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 2.7e-36 156.0 156 53.2
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 4.6e-36 155.2 165 47.9
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 6.0e-36 154.8 140 62.1
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.8e-35 153.3 154 57.8
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.8e-35 153.3 179 50.3
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 3.0e-35 152.5 162 52.5
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.5e-34 150.2 176 51.1
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 3.3e-34 149.1 131 59.5
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 6.3e-33 144.8 137 57.7
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 6.3e-33 144.8 165 47.9
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 4.1e-32 142.1 177 46.3
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 6.9e-32 141.4 174 46.6
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.6e-31 139.4 129 58.1
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.6e-31 139.4 115 61.7
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 4.5e-31 138.7 178 47.8
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 1.0e-30 137.5 169 49.1
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.3e-30 137.1 262 37.0
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.3e-30 137.1 141 53.2
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.5e-29 132.9 179 45.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 4.2e-29 132.1 91 72.5
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 4.6e-28 128.6 115 60.9
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 7.9e-28 127.9 83 69.9
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-27 126.7 86 67.4
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 6.7e-27 124.8 142 47.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 3.1e-24 115.9 173 39.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.8e-17 92.8 140 43.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 4.8e-17 92.0 75 69.3
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.1e-16 89.4 85 61.2
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 5.3e-16 88.6 76 67.1
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 5.3e-16 88.6 115 48.7
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.2e-15 87.4 166 33.1
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.6e-15 86.3 76 60.5
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.6e-15 86.3 168 35.1
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 4.5e-15 85.5 91 53.8
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 5.9e-15 85.1 86 58.1
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 7.7e-15 84.7 111 51.4
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.2e-14 83.2 76 57.9
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.0e-10 70.1 67 62.7
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 1.4e-08 63.9 150 31.3
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 4.1e-08 62.4 160 31.2
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.2e-07 60.8 49 69.4
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.2e-07 60.8 49 69.4
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.6e-07 60.5 61 54.1


User provided reference genes

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