Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g027300 Solanum pennellii HOM05D006716 ORTHO05D008396 3.9e-57 224.6 111 100.0
Solyc02g082600.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 9.5e-56 219.9 112 99.1
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 2.9e-44 181.8 110 82.7
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 2.4e-43 178.7 110 81.8
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 5.3e-38 161.0 96 81.2
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 1.2e-37 159.8 111 71.2
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 5.4e-35 151.0 110 68.2
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 3.0e-33 145.2 110 64.5
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 5.6e-32 141.0 96 72.9
CAN.G497.69 Capsicum annuum HOM05D003495 ORTHO05D004159 2.0e-29 132.5 105 61.0
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 4.5e-29 131.3 110 57.3
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.7e-28 129.4 109 58.7
Peaxi162Scf00038g00840 Petunia axillaris HOM05D006716 ORTHO05D008396 1.1e-27 126.7 94 66.0
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 1.1e-27 126.7 106 60.4
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 1.2e-26 123.2 100 64.0
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 6.0e-26 120.9 99 60.6
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 4.8e-23 111.3 108 49.1
Nitab4.5_0007530g0050 Nicotiana tabacum HOM05D006716 ORTHO05D008396 1.8e-22 109.4 74 70.3
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 3.1e-22 108.6 98 52.0
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 7.6e-21 104.0 111 46.8
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 4.9e-20 101.3 111 47.7
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 6.5e-20 100.9 110 53.6
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 6.5e-20 100.9 105 45.7
Nitab4.5_0001187g0060 Nicotiana tabacum HOM05D006716 ORTHO05D008396 1.1e-19 100.1 74 63.5
Ah.10g035300 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.9e-19 99.4 98 51.0
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 1.2e-18 96.7 63 76.2
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.6e-18 96.3 111 45.0
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 6.0e-18 94.4 107 43.9
Rhsim01G0092700 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.0e-17 93.6 105 45.7
Rhsim01G0093800 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.0e-17 93.6 105 45.7
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 1.3e-17 93.2 108 44.4
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.3e-17 93.2 111 44.1
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 1.3e-17 93.2 107 43.9
Peaxi162Scf00168g01522 Petunia axillaris HOM05D006716 ORTHO05D008396 1.5e-16 89.7 103 55.3
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 2.5e-16 89.0 106 44.3
Rhsim01G0092600 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.7e-15 85.1 110 43.6
DCAR_001167 Daucus carota HOM05D006716 ORTHO05D008396 4.8e-15 84.7 86 47.7
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 8.2e-15 84.0 112 36.6
DCAR_024034 Daucus carota HOM05D006716 ORTHO05D008396 2.4e-14 82.4 109 40.4
Peaxi162Scf00475g00024 Petunia axillaris HOM05D006716 ORTHO05D008396 4.1e-14 81.6 61 68.9
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 5.3e-14 81.3 108 43.5
Medtr5g064160 Medicago truncatula HOM05D006716 ORTHO05D008396 5.3e-14 81.3 105 43.8
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 5.3e-14 81.3 105 43.8
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 5.3e-14 81.3 108 43.5
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 2.0e-13 79.3 108 38.9
DCAR_001924 Daucus carota HOM05D006716 ORTHO05D008396 2.6e-13 79.0 107 41.1
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 2.6e-13 79.0 108 41.7
Rhsim01G0093700 Rhododendron simsii HOM05D000991 ORTHO05D008396 2.6e-13 79.0 110 43.6
Peaxi162Scf00226g00715 Petunia axillaris HOM05D006716 ORTHO05D008396 1.3e-12 76.6 60 56.7
Lj6A58T50 Lonicera japonica HOM05D006716 ORTHO05D008396 2.2e-12 75.9 88 47.7
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.9e-12 75.5 140 35.7
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 3.8e-12 75.1 107 37.4
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 8.5e-12 73.9 103 37.9
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 8.5e-12 73.9 76 48.7
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 1.1e-11 73.6 109 39.4
Peaxi162Scf01072g00410 Petunia axillaris HOM05D006716 ORTHO05D008396 1.9e-11 72.8 100 47.0
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 7.2e-11 70.9 110 39.1
Rhsim01G0093600 Rhododendron simsii HOM05D006716 ORTHO05D008396 9.4e-11 70.5 154 30.5
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 3.6e-10 68.6 84 39.3
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 4.6e-10 68.2 63 50.8
Thecc.05G273300 Theobroma cacao HOM05D006716 ORTHO05D008396 7.9e-10 67.4 83 44.6
vmacro15745 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.3e-09 65.9 79 43.0
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 1.5e-08 63.2 100 35.0
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 1.5e-08 63.2 100 34.0
Duzib177G0485 Durio zibethinus HOM05D006716 ORTHO05D008396 2.5e-08 62.4 84 39.3
SEGI_14490 Sequoiadendron giganteum HOM05D005214 ORTHO05D005861 2.5e-08 62.4 98 33.7
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 3.3e-08 62.0 82 39.0
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 5.7e-08 61.2 86 38.4
Lj2P563T13 Lonicera japonica HOM05D006716 ORTHO05D008396 5.7e-08 61.2 65 49.2
TPR.G12856 Trifolium pratense HOM05D006716 ORTHO05D008396 5.7e-08 61.2 93 40.9
Ah.10g035330 Amaranthus hybridus HOM05D006716 ORTHO05D008396 9.7e-08 60.5 73 46.6
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 9.7e-08 60.5 78 39.7
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 1.7e-07 59.7 92 32.6
CAN.G394.37 Capsicum annuum HOM05D005214 ORTHO05D005861 2.2e-07 59.3 78 38.5
TWI12G0439 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 2.2e-07 59.3 77 39.0
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.8e-07 58.9 63 46.0
SMO364G0425 Selaginella moellendorffii HOM05D005214 ORTHO05D005861 2.8e-07 58.9 95 38.9
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.8e-07 58.9 59 47.5
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 3.7e-07 58.5 78 38.5
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 3.7e-07 58.5 51 58.8
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 3.7e-07 58.5 97 38.1
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 3.7e-07 58.5 82 36.6
CSS0009954 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 4.8e-07 58.2 65 50.8
CSS0011840 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 4.8e-07 58.2 78 42.3
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 4.8e-07 58.2 78 37.2
Pp3c6_6410 Physcomitrium patens HOM05D005214 ORTHO05D005861 4.8e-07 58.2 100 32.0
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 4.8e-07 58.2 82 37.8
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 8.2e-07 57.4 87 34.5
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 8.2e-07 57.4 78 42.3
Mapoly0047s0084 Marchantia polymorpha HOM05D005214 ORTHO05D005861 8.2e-07 57.4 73 42.5
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 1.1e-06 57.0 81 39.5
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 1.1e-06 57.0 100 32.0
COL.COLO4_10501 Corchorus olitorius HOM05D005214 ORTHO05D005861 1.1e-06 57.0 77 40.3
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 1.1e-06 57.0 81 35.8
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 1.1e-06 57.0 68 38.2
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 1.1e-06 57.0 81 35.8
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 1.1e-06 57.0 68 39.7
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 1.1e-06 57.0 81 35.8
Nitab4.5_0000524g0010 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.1e-06 57.0 82 36.6
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 1.1e-06 57.0 97 38.1
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 1.1e-06 57.0 78 35.9
SGA_v2.0_scaffold80G25806 Striga asiatica HOM05D005214 ORTHO05D005861 1.1e-06 57.0 79 39.2
TPR.G12759 Trifolium pratense HOM05D006716 ORTHO05D008396 1.1e-06 57.0 93 38.7
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 1.4e-06 56.6 101 35.6
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 1.4e-06 56.6 99 37.4
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.4e-06 56.6 82 36.6
HPP92_004548 Vanilla planifolia HOM05D005214 ORTHO05D005861 1.4e-06 56.6 101 29.7
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 1.4e-06 56.6 75 42.7
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 1.8e-06 56.2 82 35.4
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 1.8e-06 56.2 78 34.6
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 1.8e-06 56.2 78 41.0
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 1.8e-06 56.2 97 36.1
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 2.4e-06 55.8 75 36.0
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 2.4e-06 55.8 97 37.1
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 2.4e-06 55.8 79 36.7
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 2.4e-06 55.8 78 37.2
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 2.4e-06 55.8 97 37.1
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 3.1e-06 55.5 79 35.4
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 3.1e-06 55.5 101 34.7
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 3.1e-06 55.5 81 37.0
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 3.1e-06 55.5 81 34.6
vmacro15748 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 3.1e-06 55.5 73 42.5
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 4.1e-06 55.1 78 35.9
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 4.1e-06 55.1 100 31.0
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 5.3e-06 54.7 68 35.3
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 5.3e-06 54.7 75 41.3
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 6.9e-06 54.3 101 35.6
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 6.9e-06 54.3 97 37.1
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 6.9e-06 54.3 78 35.9
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 6.9e-06 54.3 79 35.4
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 9.1e-06 53.9 84 33.3


User provided reference genes

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