Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 2330.4 1177 100.0
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 2299.6 1177 98.8
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 2291.9 1177 98.4
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 2146.3 1177 91.3
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 2139.0 1177 91.3
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 2132.8 1177 91.2
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 2033.5 1179 88.0
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1725.3 1187 73.4
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1643.2 1179 69.0
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1637.9 1165 70.6
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1629.8 1189 69.8
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1628.6 1170 69.7
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1599.3 1185 68.7
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1592.0 1205 67.8
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1583.5 1176 67.9
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1579.3 1177 67.5
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1572.0 1198 66.3
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1564.7 1196 65.9
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1559.3 1188 65.7
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1549.3 1184 66.6
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1540.4 1210 64.4
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1539.2 1218 64.2
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1538.1 1197 64.7
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1528.5 1192 65.8
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1526.5 1203 64.5
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1524.6 1189 63.4
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1523.5 1197 64.3
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1523.5 1197 64.7
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1518.8 1193 64.3
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1517.7 1182 64.9
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1517.7 1202 64.1
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1515.4 1190 64.8
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1509.6 1190 63.1
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1506.1 1202 63.6
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1505.0 1182 63.6
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1504.6 1201 63.7
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1500.7 1180 64.0
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1498.8 1196 63.6
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1498.4 1192 62.6
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1495.7 1180 63.8
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1495.3 1180 63.7
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1489.9 1185 63.1
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1486.1 1183 62.9
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1481.8 1181 61.8
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1481.8 1193 61.4
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1481.5 1192 61.9
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1479.5 1187 62.2
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1472.2 1208 60.8
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1471.4 1191 62.6
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1471.1 1179 63.2
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1470.3 1190 63.4
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1469.9 1188 62.6
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1469.5 1186 61.8
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1466.4 1192 62.6
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1464.5 1172 62.9
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1459.9 1181 64.0
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1451.4 1173 63.1
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1451.4 1204 61.9
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1447.2 1195 62.4
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1435.6 1196 61.6
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1425.6 1173 62.2
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1419.1 1189 63.2
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1411.4 1074 66.0
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1409.4 1167 61.7
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1408.7 1188 58.8
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1408.7 1188 59.0
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1404.4 1103 64.6
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1401.7 1182 61.3
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1394.8 1311 56.1
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1392.5 1191 59.6
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1390.2 1051 67.1
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1388.2 1190 60.2
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1379.0 1189 60.9
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1377.5 1188 59.8
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1375.9 1188 58.9
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1372.5 1188 58.8
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1372.5 1189 59.5
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1366.7 1196 59.6
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1366.7 1023 67.9
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1364.4 1188 59.3
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1362.8 1207 58.6
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1359.0 1190 59.2
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1353.6 1189 59.0
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1341.3 1080 63.9
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1340.9 1197 58.5
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1337.0 1183 58.2
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1326.2 1187 57.6
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1302.3 1176 57.5
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1295.4 1187 57.0
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1265.4 1178 55.5
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1195.6 1053 59.1
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1185.2 1049 58.4
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 0.0e+00 1174.8 1220 51.4
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 2.2e-299 1032.7 1029 54.2
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 1.8e-269 933.3 773 60.4
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 2.3e-269 932.9 726 66.4
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.6e-265 920.2 1200 42.9
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 1.9e-263 913.3 687 68.7
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 1.6e-249 867.1 1190 41.3
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 2.3e-248 863.2 1196 41.6
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 4.3e-239 832.4 743 58.8
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 8.1e-230 801.6 839 52.8
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 1.4e-218 764.2 714 54.6
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 4.1e-213 746.1 695 55.4
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 5.7e-191 672.5 513 65.9
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 7.2e-178 629.0 460 67.0
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 1.8e-176 624.4 768 45.3
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 6.8e-176 622.5 791 43.7
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 3.5e-156 557.0 436 64.0
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 9.8e-151 538.9 1351 29.7
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 1.0e-123 449.1 438 55.7
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 1.5e-114 418.7 454 49.8
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 2.5e-109 401.4 681 35.2
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 6.7e-107 393.3 364 56.6
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 9.0e-104 382.9 431 47.3
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 3.0e-67 261.5 312 45.5
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.9e-53 215.7 352 40.1
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 8.0e-52 210.3 227 49.3
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 5.2e-51 207.6 1260 22.5
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 1.2e-47 196.4 114 82.5
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 4.3e-45 188.0 169 61.5
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 7.0e-40 170.6 187 53.5
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 1.1e-29 136.7 126 59.5
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.5e-29 136.3 354 31.1
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 1.5e-10 73.2 145 29.7
Manes.04G041334 Manihot esculenta HOM05D053095 ORTHO05D007149 1.3e-06 60.1 65 50.8
Manes.08G128711 Manihot esculenta HOM05D053095 ORTHO05D007149 1.3e-06 60.1 65 50.8


User provided reference genes

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