Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 7.3e-80 300.4 145 100.0
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 7.5e-77 290.4 146 97.3
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.7e-73 279.3 145 93.1
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 4.9e-44 181.4 145 69.0
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 7.8e-42 174.1 150 67.3
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 8.4e-36 154.1 142 61.3
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 5.1e-33 144.8 134 62.7
Nitab4.5_0004507g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 5.5e-27 124.8 139 55.4
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.1e-24 117.1 134 53.7
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.9e-24 116.3 120 57.5
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 1.3e-23 113.6 144 51.4
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 2.1e-23 112.8 150 50.0
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 3.7e-23 112.1 137 48.9
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 4.8e-23 111.7 142 48.6
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 1.8e-22 109.8 143 51.7
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 4.0e-22 108.6 143 49.0
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 2.6e-21 105.9 132 47.7
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 3.4e-21 105.5 136 44.9
Nitab4.5_0000304g0050 Nicotiana tabacum HOM05D007735 ORTHO05D009638 5.8e-21 104.8 95 62.1
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 1.3e-20 103.6 134 46.3
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 2.2e-20 102.8 137 45.3
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 4.9e-20 101.7 138 48.6
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 1.1e-19 100.5 137 46.7
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 3.2e-19 99.0 140 49.3
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 4.2e-19 98.6 135 43.7
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 5.5e-19 98.2 136 47.8
Nitab4.5_0000235g0170 Nicotiana tabacum HOM05D007735 ORTHO05D009638 7.1e-19 97.8 93 59.1
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 1.6e-18 96.7 136 48.5
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 2.7e-18 95.9 135 48.1
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 3.5e-18 95.5 135 47.4
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 3.5e-18 95.5 126 50.0
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 1.0e-17 94.0 134 45.5
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 1.3e-17 93.6 145 41.4
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.8e-17 93.2 121 49.6
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 2.3e-17 92.8 133 43.6
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 2.3e-17 92.8 133 43.6
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 2.3e-17 92.8 136 45.6
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 3.9e-17 92.0 131 45.0
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 6.7e-17 91.3 130 46.9
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 1.5e-16 90.1 141 44.7
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 1.9e-16 89.7 137 46.7
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 3.3e-16 89.0 152 42.1
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 3.3e-16 89.0 136 42.6
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 7.4e-16 87.8 129 45.7
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 1.3e-15 87.0 147 40.8
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 1.6e-15 86.7 134 43.3
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.6e-15 86.7 134 43.3
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 3.7e-15 85.5 134 44.0
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 4.8e-15 85.1 135 41.5
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 6.3e-15 84.7 134 42.5
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.4e-14 83.6 134 43.3
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 2.4e-14 82.8 136 41.2
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 9.0e-14 80.9 134 42.5
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 2.6e-13 79.3 134 41.8
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 3.4e-13 79.0 127 43.3
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 4.5e-13 78.6 139 38.8
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 5.9e-13 78.2 138 41.3
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 5.9e-13 78.2 140 43.6
Migut.H02270 Erythranthe guttata HOM05D007735 ORTHO05D009638 1.0e-12 77.4 147 36.7
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 1.0e-12 77.4 130 41.5
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.3e-12 77.0 130 41.5
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 1.3e-12 77.0 130 40.8
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.2e-12 76.3 125 44.0
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 2.2e-12 76.3 134 41.0
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.9e-12 75.9 125 44.8
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 3.8e-12 75.5 140 40.7
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 5.0e-12 75.1 132 43.2
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 5.0e-12 75.1 144 42.4
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 6.5e-12 74.7 146 37.7
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 6.5e-12 74.7 130 40.8
Migut.H02268 Erythranthe guttata HOM05D007735 ORTHO05D009638 2.5e-11 72.8 141 37.6
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 5.5e-11 71.6 114 42.1
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 5.5e-11 71.6 118 40.7
MELO3C013706.2 Cucumis melo HOM05D007735 ORTHO05D009638 7.2e-11 71.2 141 38.3
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 7.2e-11 71.2 140 36.4
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 7.2e-11 71.2 140 36.4
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 7.2e-11 71.2 118 39.8
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 1.2e-10 70.5 137 39.4
ClCG10G000110 Citrullus lanatus HOM05D007735 ORTHO05D009638 1.6e-10 70.1 128 41.4
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 2.1e-10 69.7 142 36.6
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 3.6e-10 68.9 138 39.9
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 4.6e-10 68.6 137 41.6
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 6.1e-10 68.2 118 39.0
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 6.1e-10 68.2 118 39.0
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.8e-09 66.6 125 39.2
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 2.3e-09 66.2 140 37.9
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 5.7e-08 61.6 133 37.6
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 2.8e-07 59.3 143 34.3
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 4.1e-06 55.5 111 44.1


User provided reference genes

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