Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 9.0e-49 196.8 115 100.0
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 5.8e-48 194.1 115 98.3
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 5.4e-46 187.6 115 93.9
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.4e-41 172.9 115 85.2
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 9.9e-40 166.8 115 83.5
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.4e-38 162.9 115 82.6
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 4.3e-35 151.4 115 80.0
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 2.4e-25 119.0 113 64.6
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 1.2e-24 116.7 113 67.3
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 4.5e-24 114.8 120 65.8
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 5.9e-24 114.4 120 63.3
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.4e-22 109.8 126 61.1
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 3.2e-22 108.6 116 65.5
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 7.2e-22 107.5 119 62.2
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 3.5e-21 105.1 115 61.7
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 6.1e-21 104.4 119 62.2
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 7.9e-21 104.0 114 67.5
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 7.9e-21 104.0 100 71.0
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 1.0e-20 103.6 115 65.2
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 1.0e-20 103.6 114 65.8
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 3.0e-20 102.1 115 65.2
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 5.1e-20 101.3 119 62.2
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 5.1e-20 101.3 124 56.5
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-19 99.0 114 64.0
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-19 99.0 114 64.0
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 3.3e-19 98.6 112 61.6
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 3.3e-19 98.6 123 59.3
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 5.7e-19 97.8 123 59.3
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 7.4e-19 97.4 116 63.8
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 9.7e-19 97.1 118 57.6
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 9.7e-19 97.1 111 63.1
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 9.7e-19 97.1 116 63.8
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 1.6e-18 96.3 105 67.6
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 2.8e-18 95.5 125 60.0
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 8.2e-18 94.0 107 59.8
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.4e-17 93.2 114 62.3
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 3.1e-17 92.0 121 58.7
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 5.3e-17 91.3 116 61.2
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.2e-16 90.1 116 56.0
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 1.2e-16 90.1 116 60.3
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 5.9e-16 87.8 115 53.9
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 5.9e-16 87.8 115 53.9
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 5.9e-16 87.8 125 52.8
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.0e-15 87.0 114 57.9
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 1.0e-15 87.0 119 59.7
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.3e-15 86.7 122 53.3
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.7e-15 86.3 104 58.7
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 2.2e-15 85.9 115 53.9
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 2.9e-15 85.5 119 54.6
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 2.9e-15 85.5 119 54.6
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 3.8e-15 85.1 126 53.2
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 5.0e-15 84.7 116 56.9
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 5.0e-15 84.7 115 53.0
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 6.5e-15 84.3 115 52.2
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 6.5e-15 84.3 118 57.6
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 8.5e-15 84.0 122 51.6
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 8.5e-15 84.0 125 54.4
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 8.5e-15 84.0 126 51.6
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 8.5e-15 84.0 118 57.6
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 8.5e-15 84.0 127 54.3
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-14 83.6 124 54.0
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.1e-14 83.6 115 53.9
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 1.9e-14 82.8 122 51.6
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 2.5e-14 82.4 119 56.3
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 3.2e-14 82.0 122 51.6
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 3.2e-14 82.0 116 55.2
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 4.2e-14 81.6 124 49.2
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 5.5e-14 81.3 122 51.6
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 5.5e-14 81.3 122 51.6
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 5.5e-14 81.3 124 54.0
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 7.2e-14 80.9 125 53.6
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 7.2e-14 80.9 122 51.6
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 9.4e-14 80.5 121 52.1
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 9.4e-14 80.5 123 52.0
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.2e-13 80.1 119 54.6
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 1.6e-13 79.7 122 50.8
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 1.6e-13 79.7 120 51.7
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.6e-13 79.7 118 54.2
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.1e-13 79.3 124 53.2
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.7e-13 79.0 124 53.2
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 3.6e-13 78.6 122 50.0
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.9e-13 77.4 111 52.3
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 7.9e-13 77.4 122 48.4
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 1.0e-12 77.0 118 52.5
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 1.0e-12 77.0 122 51.6
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.0e-12 77.0 111 52.3
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.4e-12 76.6 119 47.9
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.4e-12 76.6 111 52.3
PGSC0003DMG400034320 Solanum tuberosum HOM05D001388 ORTHO05D001234 1.4e-12 76.6 52 86.5
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 1.8e-12 76.3 128 50.8
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 3.0e-12 75.5 117 50.4
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 5.1e-12 74.7 111 51.4
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 5.1e-12 74.7 111 51.4
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 8.8e-12 73.9 123 51.2
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 4.3e-11 71.6 107 53.3
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 1.3e-10 70.1 114 52.6
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 2.8e-10 68.9 114 51.8
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.1e-09 67.0 112 48.2
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.8e-09 66.2 115 51.3
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 4.1e-09 65.1 129 48.1
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 4.1e-09 65.1 97 54.6
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 2.6e-08 62.4 102 54.9
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 2.6e-08 62.4 121 46.3
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 4.5e-08 61.6 101 55.4
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 5.9e-08 61.2 58 72.4
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.0e-07 60.5 76 57.9
Peaxi162Scf00036g00205 Petunia axillaris HOM05D018135 ORTHO05D020298 1.7e-07 59.7 44 75.0
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 2.2e-07 59.3 72 59.7
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 1.4e-06 56.6 131 43.5
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.9e-06 56.2 75 56.0
BolC9t58594H Brassica oleracea HOM05D006797 ORTHO05D007696 9.4e-06 53.9 69 55.1
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 9.4e-06 53.9 46 69.6


User provided reference genes

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