Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 8.7e-257 889.8 448 100.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.4e-254 882.5 448 99.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.2e-251 870.9 448 98.2
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 4.8e-239 830.9 451 92.9
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.9e-228 795.0 451 90.9
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.5e-227 792.0 449 91.1
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 3.7e-223 778.1 452 88.1
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.2e-195 684.9 441 79.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 9.4e-195 683.7 441 79.6
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.8e-193 679.5 453 78.1
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 6.5e-188 661.0 455 75.2
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 4.8e-183 644.8 455 74.5
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.1e-182 642.1 454 74.2
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.1e-182 642.1 450 72.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.6e-181 639.8 454 72.0
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.9e-181 637.9 534 64.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 5.0e-180 634.8 455 71.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 8.6e-180 634.0 442 73.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.5e-179 632.5 450 72.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 9.5e-179 630.6 485 66.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.8e-177 626.3 436 73.2
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 8.9e-177 624.0 456 70.8
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 1.5e-176 623.2 454 69.4
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.0e-176 622.9 461 69.2
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.3e-175 620.2 463 69.1
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.9e-175 618.2 440 71.6
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-174 617.1 454 71.4
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-174 616.3 445 71.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.7e-173 612.5 455 69.9
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.5e-173 612.1 455 69.7
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 4.5e-173 611.7 455 69.7
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 7.8e-173 610.9 456 68.0
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.3e-172 610.1 449 68.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.8e-172 608.6 448 69.4
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.8e-172 608.6 445 69.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 3.8e-172 608.6 452 68.8
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 5.6e-171 604.7 449 68.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.2e-170 603.6 455 69.5
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 4.7e-170 601.7 426 73.9
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.0e-169 600.5 451 67.4
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 6.8e-169 597.8 458 66.6
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.2e-168 597.0 453 66.2
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.5e-168 596.7 449 68.8
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.5e-168 596.7 450 68.0
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.0e-168 596.3 426 73.7
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.3e-167 593.6 451 68.1
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.2e-167 592.8 456 67.3
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.7e-167 592.0 451 68.5
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.9e-167 591.7 446 67.0
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.1e-166 590.5 451 67.2
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-165 587.0 458 65.9
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.7e-165 585.9 450 65.8
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 7.8e-165 584.3 471 63.9
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.8e-165 584.3 458 65.7
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.3e-164 583.6 461 65.5
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.7e-164 583.2 455 66.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.9e-164 582.0 451 67.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 3.9e-164 582.0 454 66.7
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 5.0e-164 581.6 451 68.7
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 8.6e-164 580.9 451 66.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.5e-163 579.3 435 69.4
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 2.5e-163 579.3 448 66.3
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-163 579.3 458 65.7
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 3.3e-163 578.9 458 65.5
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.3e-163 578.6 444 67.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.1e-162 576.2 458 65.3
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 3.6e-162 575.5 448 65.2
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 4.7e-162 575.1 453 65.1
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 6.2e-162 574.7 448 65.0
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 8.0e-162 574.3 450 65.8
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.4e-161 573.5 448 64.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 3.1e-161 572.4 448 65.8
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 3.1e-161 572.4 448 64.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 5.2e-161 571.6 465 64.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 6.8e-161 571.2 452 64.8
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.8e-161 571.2 448 66.5
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.2e-160 570.5 451 65.4
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.0e-160 569.7 452 65.5
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.6e-160 569.3 452 65.3
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.6e-160 569.3 452 65.3
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.4e-160 568.5 448 67.4
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 7.5e-160 567.8 455 65.5
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-159 567.0 449 64.6
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.3e-159 567.0 514 60.1
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.7e-159 566.6 454 65.9
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-159 566.6 454 66.7
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.9e-159 565.8 449 64.8
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 4.9e-159 565.1 449 66.1
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 4.9e-159 565.1 476 63.2
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 6.4e-159 564.7 452 65.5
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.4e-159 564.7 434 68.4
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 8.3e-159 564.3 455 65.5
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.4e-158 563.5 451 65.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.4e-158 562.8 451 63.2
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.2e-158 562.4 472 64.0
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 7.0e-158 561.2 451 65.2
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.2e-157 560.5 447 66.7
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.2e-157 560.5 471 63.3
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.6e-157 560.1 454 65.9
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 6.0e-157 558.1 451 62.5
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.7e-156 556.6 449 64.8
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 3.9e-156 555.4 477 62.7
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 8.6e-156 554.3 449 65.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.9e-155 553.1 451 64.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.3e-155 552.4 448 66.3
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 7.3e-155 551.2 449 65.3
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.2e-154 550.4 449 62.6
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.6e-154 550.1 450 66.0
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-154 549.7 447 65.1
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.8e-153 546.6 446 65.0
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.0e-152 543.1 421 68.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.6e-152 542.7 484 59.3
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 8.3e-151 537.7 450 63.8
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.4e-150 537.0 447 64.9
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 2.7e-149 532.7 446 63.0
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.7e-148 530.0 418 67.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.1e-148 528.5 403 68.0
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 6.6e-148 528.1 415 67.0
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 9.5e-147 524.2 453 62.9
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 6.4e-143 511.5 458 62.0
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-142 510.0 428 63.1
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.5e-141 505.8 429 62.5
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.2e-138 497.3 444 60.4
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.7e-138 495.4 425 60.7
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.2e-135 486.5 392 66.8
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.6e-132 474.9 447 58.8
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 6.9e-129 464.9 511 55.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-124 450.3 390 60.5
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 4.3e-123 445.7 452 55.5
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.8e-122 442.2 428 54.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.6e-117 425.6 273 80.6
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 8.7e-116 421.4 297 72.1
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.3e-114 417.5 337 65.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 8.4e-111 404.8 470 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 7.1e-110 401.7 450 50.2
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 6.0e-109 398.7 322 65.2
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 4.8e-106 389.0 450 49.8
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.8e-98 363.2 452 47.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-96 357.8 317 62.8
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 7.7e-88 328.6 191 85.3
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.2e-86 322.0 319 55.8
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 7.4e-83 312.0 443 44.9
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.2e-75 288.1 193 71.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.6e-75 287.0 191 73.3
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 9.1e-73 278.5 236 65.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.7e-71 274.2 296 51.4
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 8.5e-71 271.9 216 66.2
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.7e-69 266.9 286 51.0
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.0e-68 263.5 521 36.9
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.8e-63 246.5 189 67.7
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 8.6e-63 245.4 158 81.0
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.4e-52 211.5 167 64.1
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 5.8e-51 206.1 120 85.8
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.3e-50 204.9 261 46.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.1e-49 201.8 183 60.1
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 3.2e-49 200.3 213 52.6
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.9e-46 191.0 515 32.8
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.2e-45 186.0 169 53.3
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.4e-44 184.9 129 70.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.0e-44 183.3 275 43.3
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 4.4e-43 179.9 501 30.9
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 9.8e-43 178.7 136 65.4
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.1e-37 161.0 289 36.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.6e-32 143.3 155 54.2
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 8.9e-28 129.0 87 71.3
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.4e-27 127.1 79 73.4
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.6e-24 116.7 79 81.0
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.6e-19 100.9 130 48.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.2e-18 97.8 155 43.2
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.2e-16 92.0 101 53.5
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 5.6e-14 83.2 74 59.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.6e-13 81.6 127 41.7
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.6e-13 81.6 51 78.4
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 4.8e-13 80.1 107 48.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 2.2e-10 71.2 43 81.4
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.2e-08 65.5 55 60.0
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-08 65.5 52 71.2
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-08 65.5 63 50.8
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 1.8e-07 61.6 76 51.3
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 8.7e-07 59.3 150 32.0
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.5e-06 57.8 28 85.7
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 5.6e-06 56.6 173 27.7
Phvul.007G247300 Phaseolus vulgaris HOM05D002054 ORTHO05D005362 9.6e-06 55.8 172 27.3
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 9.6e-06 55.8 160 33.1
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 9.6e-06 55.8 149 30.2


User provided reference genes

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