Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 0.0e+00 1132.5 688 100.0
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 0.0e+00 1087.4 691 97.0
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 0.0e+00 1075.8 688 91.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 6.1e-270 934.1 693 80.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.9e-251 871.3 697 78.5
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.0e-241 837.8 706 73.2
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.4e-221 772.7 719 71.8
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.2e-137 494.6 747 54.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.2e-137 492.3 770 51.7
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 8.1e-137 491.9 758 53.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.0e-135 487.3 258 97.7
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.8e-121 440.3 761 49.9
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.1e-117 425.6 740 46.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-114 417.5 744 45.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.1e-112 410.2 697 45.1
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.2e-110 404.1 699 46.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-109 401.7 718 50.8
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.1e-109 401.7 715 48.3
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-108 398.3 736 47.7
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 6.7e-107 392.5 729 48.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.5e-106 391.3 629 47.1
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.5e-106 390.6 729 43.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.6e-105 387.9 661 46.0
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.8e-104 384.4 737 47.9
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.6e-103 380.6 716 46.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 8.4e-102 375.6 689 45.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-100 371.7 638 48.7
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 6.0e-100 369.4 713 42.8
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.9e-100 369.0 722 46.0
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-99 367.5 698 42.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.1e-99 366.3 678 43.8
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 5.1e-99 366.3 768 43.4
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-98 364.8 738 41.2
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.9e-98 364.4 693 47.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.6e-98 362.1 772 44.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.3e-97 361.7 740 45.7
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 4.5e-95 353.2 711 43.7
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.8e-95 352.8 641 47.4
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.7e-94 351.3 691 45.7
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 9.3e-93 345.5 725 46.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.1e-92 344.4 696 47.1
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.7e-92 344.0 638 46.9
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.8e-91 341.3 659 43.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.3e-91 340.9 728 41.3
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.7e-89 333.6 726 43.5
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.8e-89 333.2 702 41.9
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.1e-88 330.5 698 45.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.2e-87 328.6 685 45.0
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.5e-87 328.2 720 46.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 5.9e-87 326.2 788 39.1
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.0e-86 325.5 710 42.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.3e-86 325.1 726 43.9
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 3.8e-86 323.6 729 41.4
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.0e-86 323.2 717 46.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 8.5e-86 322.4 746 43.7
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 2.5e-85 320.9 717 41.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 5.5e-85 319.7 719 40.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.4e-83 315.1 688 42.3
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.3e-83 314.3 748 43.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.1e-83 313.2 688 42.0
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.1e-83 313.2 688 42.0
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 6.7e-83 312.8 718 43.6
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-82 312.0 804 41.5
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.5e-82 311.6 710 44.5
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.0e-82 311.2 748 42.6
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-82 309.3 705 41.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.2e-81 307.8 666 45.3
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.8e-81 307.4 698 42.6
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.3e-81 306.2 725 40.0
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 8.2e-81 305.8 717 43.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.8e-80 304.7 722 39.8
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 4.1e-80 303.5 698 46.0
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 5.3e-80 303.1 764 38.0
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-78 298.5 683 43.5
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.2e-78 297.7 724 43.4
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 9.4e-77 292.4 187 80.7
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.2e-76 292.0 636 42.0
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.1e-74 285.4 686 41.5
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.4e-74 283.5 656 44.2
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 9.7e-74 282.3 691 44.1
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-73 281.6 672 39.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.7e-73 281.6 597 39.7
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.1e-72 278.9 660 38.2
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 5.3e-72 276.6 634 41.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.2e-71 275.4 700 39.0
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 5.9e-71 273.1 695 37.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-70 271.9 644 39.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.9e-70 270.8 598 40.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 2.9e-70 270.8 690 42.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.1e-69 268.9 685 42.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.1e-69 268.9 703 37.7
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.0e-68 262.7 700 35.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 6.7e-67 259.6 690 40.3
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.6e-66 257.7 653 37.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.7e-65 255.0 631 38.2
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.8e-64 251.5 636 39.9
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.1e-64 250.8 682 39.4
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.2e-63 248.8 473 43.3
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.4e-59 235.3 683 40.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 5.2e-59 233.4 722 34.8
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.6e-58 231.1 705 38.0
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 7.5e-58 229.6 603 38.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.1e-56 223.8 655 35.1
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.1e-56 223.8 721 34.4
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.0e-54 219.2 732 38.1
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.7e-54 218.4 688 40.0
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 8.0e-52 209.5 570 42.3
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.3e-51 208.0 705 38.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 4.4e-50 203.8 709 38.4
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.7e-50 203.4 688 37.4
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.5e-50 203.0 560 41.2
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.8e-49 201.1 387 53.7
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-48 199.1 332 46.7
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.4e-48 198.0 706 37.4
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.5e-47 194.1 576 40.1
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.7e-47 193.0 617 35.0
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.7e-46 191.8 551 35.8
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.8e-46 190.7 711 37.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.8e-46 190.7 604 34.8
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 5.0e-46 190.3 639 38.5
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.6e-46 189.9 541 41.4
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.9e-45 188.3 266 49.2
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.9e-45 188.3 576 36.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 8.0e-44 183.0 436 46.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.0e-43 182.6 716 37.2
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.8e-43 181.8 698 31.9
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 4.0e-43 180.6 687 36.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.2e-42 179.1 424 38.4
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-42 177.9 646 37.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.6e-42 177.9 727 36.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.3e-41 173.3 713 37.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.2e-40 171.0 556 35.6
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.0e-39 168.3 659 36.4
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 4.5e-39 167.2 569 33.4
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.9e-38 164.1 481 39.5
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.3e-37 161.0 676 32.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.6e-36 158.7 517 33.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 6.8e-35 153.3 649 30.4
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 2.0e-34 151.8 325 38.8
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.0e-34 151.8 627 32.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 7.5e-34 149.8 403 35.2
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 8.3e-33 146.4 163 57.1
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 3.3e-29 134.4 493 40.4
Peaxi162Scf00559g00031 Petunia axillaris HOM05D003795 ORTHO05D004308 1.6e-28 132.1 623 28.1
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 6.2e-28 130.2 659 28.7
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 6.2e-28 130.2 193 48.7
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-27 129.4 498 33.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.1e-27 127.9 483 30.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 6.8e-27 126.7 294 37.4
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 3.2e-24 117.9 503 34.2
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 3.2e-24 117.9 503 34.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.4e-24 117.1 726 28.5
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 5.4e-24 117.1 362 42.3
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 4.6e-23 114.0 496 33.1
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.9e-22 110.9 136 51.5
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 5.6e-21 107.1 498 35.3
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-19 102.8 143 49.0
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.3e-19 101.7 326 48.5
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.1e-19 101.3 544 31.4
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 3.7e-17 94.4 382 38.2
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.9e-16 92.0 275 33.5
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.1e-16 90.9 240 37.5
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.3e-14 85.9 126 48.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.0e-14 84.7 221 38.9
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-13 82.8 131 48.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.1e-11 74.7 97 48.5
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 2.0e-10 72.0 115 45.2
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.2e-09 68.6 202 31.7
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-08 66.2 104 47.1
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 4.2e-08 64.3 113 43.4
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.6e-07 60.8 58 60.3
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 5.1e-06 57.4 216 44.4
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 6.6e-06 57.0 194 50.0


User provided reference genes

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