Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.6e-79 299.3 146 100.0
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.8e-78 295.8 146 98.6
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.4e-75 286.2 146 95.2
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 6.2e-71 270.8 146 89.7
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 9.9e-69 263.5 146 86.3
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.2e-68 262.3 144 86.1
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 9.9e-61 236.9 146 76.0
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.3e-60 236.5 143 76.2
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.9e-60 235.3 143 74.8
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.8e-60 235.0 146 73.3
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 8.4e-60 233.8 140 75.7
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.4e-59 233.0 143 75.5
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.4e-59 233.0 143 74.1
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.6e-58 228.0 144 75.0
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.3e-57 225.7 140 71.4
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.9e-57 224.9 140 72.9
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.9e-57 224.9 147 72.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 6.7e-57 224.2 145 73.8
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 6.7e-57 224.2 145 73.8
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 1.1e-56 223.4 143 70.6
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.5e-56 222.2 146 67.8
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.5e-56 222.2 144 71.5
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.5e-56 222.2 142 69.7
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 5.6e-56 221.1 139 72.7
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.3e-55 219.9 140 70.0
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.3e-55 219.9 137 75.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 2.1e-55 219.2 146 69.2
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.8e-55 218.8 135 73.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 4.8e-55 218.0 143 69.2
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 6.2e-55 217.6 141 70.9
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.1e-54 216.9 143 69.9
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.1e-54 216.9 146 67.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.4e-54 216.5 136 72.1
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.4e-54 215.7 142 68.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.4e-54 215.7 146 68.5
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.1e-54 215.3 143 67.8
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.0e-54 214.9 143 66.4
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 5.3e-54 214.5 146 67.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 5.3e-54 214.5 146 68.5
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 146 67.8
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.2e-53 213.4 146 67.1
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-53 213.0 143 67.8
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-53 213.0 146 66.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.5e-53 213.0 143 67.1
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-53 212.6 143 67.8
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 2.0e-53 212.6 143 67.1
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.0e-53 212.6 143 67.8
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 2.0e-53 212.6 140 70.7
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 2.6e-53 212.2 146 66.4
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 3.4e-53 211.8 146 66.4
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.5e-53 211.5 146 65.8
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 5.8e-53 211.1 143 66.4
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 7.6e-53 210.7 142 67.6
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.6e-53 210.7 143 66.4
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 9.9e-53 210.3 121 76.0
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 9.9e-53 210.3 143 67.8
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.3e-52 209.9 146 65.8
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.3e-52 209.9 140 69.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.7e-52 209.5 141 68.1
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 2.2e-52 209.1 121 75.2
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.2e-52 209.1 143 65.7
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.2e-52 209.1 146 67.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.8e-52 208.4 140 69.3
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.8e-52 208.4 140 69.3
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 3.8e-52 208.4 143 65.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 6.4e-52 207.6 143 66.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-51 206.8 148 65.5
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-51 206.8 141 68.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-51 206.8 141 67.4
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-51 206.5 146 67.8
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.4e-51 206.5 144 68.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 68.8
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.4e-51 205.7 138 68.1
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.4e-51 205.7 141 65.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 3.2e-51 205.3 143 64.3
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 3.2e-51 205.3 145 69.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 3.2e-51 205.3 145 69.0
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.2e-51 205.3 138 68.8
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.2e-51 205.3 138 68.8
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 3.2e-51 205.3 141 66.7
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.2e-51 205.3 138 63.8
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 7.1e-51 204.1 140 65.7
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 7.1e-51 204.1 143 64.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 7.1e-51 204.1 136 67.6
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.2e-50 203.4 171 59.1
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 2.1e-50 202.6 141 65.2
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.1e-50 202.6 141 65.2
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.1e-50 202.6 143 65.0
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.7e-50 202.2 159 61.0
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 2.7e-50 202.2 135 68.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.7e-50 202.2 143 65.0
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-50 202.2 138 63.0
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.3e-49 199.9 165 58.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.3e-49 199.9 145 65.5
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.3e-49 199.9 147 66.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.8e-49 199.5 133 66.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-49 199.5 141 64.5
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.0e-49 198.7 122 73.8
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 3.9e-49 198.4 146 63.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 5.1e-49 198.0 121 74.4
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.1e-49 198.0 143 67.1
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.7e-49 197.6 146 63.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.7e-49 197.2 144 60.4
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.1e-48 196.8 140 65.0
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.3e-48 194.9 143 62.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 7.4e-48 194.1 140 62.1
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.6e-47 193.0 141 61.7
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-47 192.6 144 61.8
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.7e-47 191.8 139 62.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 3.7e-47 191.8 136 64.7
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 6.2e-47 191.0 117 74.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-46 189.9 130 66.2
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.8e-46 189.5 117 72.6
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.8e-46 189.5 117 72.6
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 3.1e-46 188.7 136 64.0
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 4.0e-46 188.3 143 60.8
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 4.0e-46 188.3 140 60.7
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.0e-46 188.3 111 79.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 9.0e-46 187.2 146 56.8
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.2e-45 186.8 147 59.9
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.0e-45 186.0 137 62.0
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 4.5e-45 184.9 121 69.4
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 5.8e-45 184.5 147 61.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.7e-44 183.0 143 58.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 8.4e-44 180.6 146 55.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.9e-43 179.5 159 56.0
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.2e-42 176.8 115 68.7
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.7e-41 171.0 141 57.4
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 3.3e-40 168.7 114 64.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.8e-39 165.6 141 55.3
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.5e-37 159.8 112 63.4
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 5.0e-36 154.8 136 53.7
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 5.5e-35 151.4 140 51.4
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.6e-34 148.7 128 54.7
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.6e-34 148.7 128 54.7
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.3e-32 141.7 99 63.6
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.4e-32 141.0 129 51.9
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.4e-30 136.7 85 74.1
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 7.7e-29 131.0 129 49.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.7e-28 129.8 127 48.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-25 120.2 99 59.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-25 120.2 99 58.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.0e-24 116.3 124 46.0
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.3e-23 113.6 148 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.8e-23 111.7 127 43.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 4.8e-23 111.7 87 59.8
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.5e-21 106.7 100 48.0
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.4e-21 105.5 137 39.4
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 4.5e-21 105.1 126 41.3
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 6.5e-20 101.3 112 48.2
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.1e-18 96.3 133 36.8
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.0e-17 92.4 143 35.7
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 7.4e-16 87.8 54 70.4
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-15 86.3 55 69.1
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-15 86.3 55 69.1
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-15 86.3 55 69.1
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.8e-15 85.9 55 69.1
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 8.2e-15 84.3 59 66.1
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 8.2e-15 84.3 61 63.9
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.4e-14 83.6 99 44.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 5.3e-14 81.6 123 35.8
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.6e-13 80.1 83 45.8
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 9.4e-11 70.9 49 63.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.1e-10 69.7 117 35.9
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 9.7e-08 60.8 41 68.3
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 1.3e-07 60.5 39 69.2
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.8e-06 56.6 32 75.0
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 41 51.2


User provided reference genes

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