Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 5.8e-292 1006.9 535 100.0
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.7e-291 1005.4 535 99.8
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 4.2e-290 1000.7 535 99.3
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 8.2e-262 906.7 635 78.1
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 4.8e-254 880.9 501 91.2
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 7.4e-247 857.1 626 77.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.8e-240 835.9 504 83.3
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 4.8e-238 827.8 504 82.5
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 3.5e-236 821.6 533 78.6
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 8.5e-235 817.0 501 81.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.6e-233 812.8 534 78.1
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-232 809.3 501 81.4
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.8e-232 809.3 504 80.4
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 3.0e-232 808.5 532 77.6
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 6.7e-232 807.4 508 80.9
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 2.6e-231 805.4 501 81.6
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 7.5e-231 803.9 501 80.8
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 1.3e-230 803.1 505 81.2
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.3e-230 803.1 501 81.2
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.7e-230 802.7 501 81.8
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.7e-230 802.7 534 78.1
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 6.3e-230 800.8 534 77.9
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 8.2e-230 800.4 504 79.8
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.8e-229 799.3 528 77.1
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 7.0e-229 797.3 542 76.8
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 7.0e-229 797.3 504 79.0
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.6e-228 796.2 501 79.6
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.0e-228 795.8 504 78.8
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 2.0e-228 795.8 535 75.5
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.7e-228 795.4 504 79.4
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 3.5e-228 795.0 499 79.6
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 7.7e-228 793.9 501 79.8
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.0e-227 793.5 501 79.8
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.9e-227 792.0 504 78.6
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 5.0e-227 791.2 550 74.5
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 8.5e-227 790.4 501 79.0
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.2e-226 788.5 501 79.0
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 4.2e-226 788.1 529 76.4
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 9.4e-226 786.9 501 79.0
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.6e-225 786.2 501 78.8
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 2.1e-225 785.8 501 79.0
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 2.7e-225 785.4 554 74.0
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 3.6e-225 785.0 495 79.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 4.7e-225 784.6 501 78.8
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.0e-224 783.5 539 76.1
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.0e-224 783.5 535 75.9
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.8e-224 782.7 501 77.6
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.3e-224 782.3 502 79.3
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 4.0e-224 781.6 506 78.5
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.2e-223 780.0 544 76.1
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 9.8e-223 776.9 531 76.1
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 5.4e-221 771.2 531 73.3
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 5.9e-220 767.7 501 77.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.3e-219 766.5 626 65.7
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.7e-219 766.1 502 78.3
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.7e-219 766.1 500 78.0
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 2.2e-219 765.8 503 77.5
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 2.2e-219 765.8 502 76.7
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 2.2e-219 765.8 504 76.8
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 2.2e-219 765.8 531 73.4
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.5e-218 763.1 501 76.6
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.6e-217 758.4 501 76.4
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 4.7e-217 758.1 503 76.3
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.3e-216 755.7 517 74.7
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.2e-215 753.4 544 71.3
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 4.4e-215 751.5 501 76.2
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 9.8e-215 750.4 511 75.0
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 1.3e-214 750.0 554 70.6
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 3.7e-214 748.4 517 74.1
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 4.9e-214 748.0 504 76.6
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.9e-211 738.8 503 75.1
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.9e-211 738.8 525 71.4
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.8e-211 738.4 504 74.8
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 6.6e-211 737.6 503 74.8
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.9e-210 736.1 503 75.0
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 2.8e-209 732.3 500 75.6
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.0e-208 730.3 500 75.2
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 3.0e-208 728.8 530 71.3
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 3.0e-208 728.8 500 74.6
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.0e-208 728.4 503 74.4
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 2.0e-207 726.1 540 72.6
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 4.9e-206 721.5 503 74.0
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 5.9e-204 714.5 559 68.7
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 2.3e-203 712.6 447 80.1
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 6.6e-203 711.1 498 74.1
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 2.0e-199 699.5 508 70.7
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.2e-190 669.5 426 80.0
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.6e-188 663.3 502 70.1
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.1e-188 662.9 530 66.8
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.1e-188 662.9 503 66.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.7e-187 659.8 493 66.7
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.5e-186 656.8 504 66.3
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 5.6e-178 628.2 365 91.8
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 7.3e-178 627.9 430 75.8
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.1e-176 622.5 501 62.7
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.1e-176 622.5 501 62.7
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 1.2e-167 594.0 446 66.4
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 4.6e-164 582.0 467 66.2
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 6.0e-164 581.6 364 80.2
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.1e-161 573.2 369 77.5
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 6.2e-161 571.6 485 60.4
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 2.4e-157 559.7 517 55.1
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.9e-154 550.1 360 76.4
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 6.9e-144 515.0 330 79.4
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.3e-137 494.2 321 78.8
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.4e-115 421.0 249 82.3
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.0e-115 419.9 249 81.9
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 2.0e-111 407.1 461 54.0
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 4.0e-107 392.9 506 45.3
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 5.9e-103 379.0 240 80.0
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 2.5e-101 373.6 483 44.9
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.3e-86 323.9 485 41.2
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.1e-76 290.8 340 51.5
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 1.3e-73 281.6 173 80.3
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 4.8e-52 209.9 477 35.4
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-51 208.0 493 33.5
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 7.6e-50 202.6 113 89.4
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 1.3e-49 201.8 199 57.8
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.3e-46 191.8 496 32.1
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 8.7e-38 162.5 289 39.4
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-37 162.2 467 32.8
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 1.5e-37 161.8 449 32.7
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 4.0e-35 153.7 115 65.2
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 5.8e-34 149.8 451 32.2
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-29 135.2 295 35.6
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-29 133.3 334 34.7
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-28 131.7 276 37.0
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-28 131.3 276 37.3
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.8e-28 131.0 86 70.9
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-24 117.5 219 40.2
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 4.2e-24 117.1 364 31.0
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 4.2e-24 117.1 275 32.0
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 9.4e-24 115.9 193 42.0
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.5e-21 107.8 59 84.7
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.7e-21 106.7 358 30.4
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 9.7e-21 105.9 206 38.3
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-20 104.4 142 44.4
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-20 103.2 207 39.1
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.4e-19 101.3 74 64.9
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 3.1e-19 100.9 404 29.2
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 3.1e-19 100.9 231 32.5
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 4.1e-19 100.5 306 29.7
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 9.1e-19 99.4 142 43.0
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 5.9e-18 96.7 416 28.1
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.0e-14 85.9 326 29.1
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.9e-14 84.0 243 32.9
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 4.1e-11 73.9 160 37.5


User provided reference genes

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