Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 8.9e-215 750.0 374 100.0
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 8.1e-192 673.7 376 92.0
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.9e-175 617.5 376 84.0
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.6e-174 615.5 375 85.1
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.1e-171 604.4 367 83.4
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.0e-158 562.8 375 76.0
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.3e-157 560.1 375 74.9
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.4e-153 544.3 376 74.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.8e-152 541.6 376 74.2
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 8.2e-152 540.8 376 74.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 5.0e-149 531.6 375 73.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.6e-145 519.2 377 71.6
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 2.0e-129 466.5 379 62.0
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 3.4e-129 465.7 375 62.9
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 2.4e-127 459.5 378 64.6
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 3.5e-126 455.7 374 62.6
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 4.5e-126 455.3 377 61.3
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.3e-125 453.8 377 61.3
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.7e-125 453.4 374 61.8
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.1e-123 446.4 380 60.3
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.8e-123 446.0 373 61.9
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 6.8e-122 441.4 374 60.7
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.2e-121 440.7 374 62.3
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.8e-121 438.3 374 59.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 5.8e-121 438.3 380 60.3
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.3e-120 437.2 379 60.9
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.7e-120 436.8 383 58.7
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.2e-120 436.4 375 59.7
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 3.7e-120 435.6 374 59.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 4.9e-120 435.3 376 60.6
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 6.4e-120 434.9 374 60.7
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.4e-119 433.7 374 59.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.9e-119 433.3 374 59.9
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 9.2e-119 431.0 374 59.4
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.6e-118 430.3 385 59.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.6e-118 430.3 375 59.5
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 3.5e-118 429.1 373 58.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 4.6e-118 428.7 374 59.9
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.6e-117 424.9 373 60.3
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 8.6e-117 424.5 381 59.1
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 8.6e-117 424.5 374 58.0
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.5e-116 423.7 379 58.0
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.9e-116 423.3 374 58.6
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 3.3e-116 422.5 382 58.9
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 5.6e-116 421.8 374 58.0
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 7.3e-116 421.4 384 59.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.6e-115 419.1 377 58.9
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 3.6e-115 419.1 373 59.2
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.1e-114 417.5 385 58.7
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.4e-114 417.2 384 58.9
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.3e-114 416.4 374 57.8
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.1e-114 416.0 374 59.4
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.6e-113 412.9 382 55.5
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 2.6e-113 412.9 379 59.6
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.4e-113 412.5 388 58.8
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 4.4e-113 412.1 379 57.5
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 9.8e-113 411.0 374 57.0
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.3e-112 410.6 382 55.5
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.2e-112 409.8 382 55.2
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.9e-112 409.5 380 57.4
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 4.9e-112 408.7 378 57.4
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 6.4e-112 408.3 380 56.6
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 8.3e-112 407.9 378 56.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.9e-111 406.8 385 55.3
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 3.2e-111 406.0 378 56.6
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.2e-110 404.1 374 57.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.7e-110 402.9 375 57.9
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 4.6e-110 402.1 375 55.7
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.7e-109 400.2 380 55.8
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.3e-109 399.8 369 58.5
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 3.0e-109 399.4 376 55.3
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 3.0e-109 399.4 366 57.1
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.9e-109 399.1 376 55.6
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 3.9e-109 399.1 376 55.3
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 5.1e-109 398.7 375 57.1
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 8.6e-109 397.9 376 55.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.5e-108 397.1 378 55.6
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-108 396.4 381 56.4
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 5.6e-108 395.2 375 56.8
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 7.3e-108 394.8 378 54.8
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 7.3e-108 394.8 378 55.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-107 393.3 381 55.9
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.8e-107 392.9 356 57.3
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.6e-107 392.5 357 57.4
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 3.6e-107 392.5 391 53.7
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 2.3e-106 389.8 374 56.1
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.1e-106 389.4 381 55.9
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 8.9e-106 387.9 376 55.9
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.9e-106 387.9 376 55.6
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.0e-105 386.7 376 55.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.4e-105 386.0 376 54.0
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 4.4e-105 385.6 379 55.7
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.5e-105 384.8 376 55.6
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.5e-105 384.8 376 55.6
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.1e-103 380.9 376 55.1
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.9e-103 380.2 379 54.1
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.4e-103 378.6 378 54.2
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 9.2e-103 377.9 373 55.2
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.3e-101 374.0 182 97.8
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.5e-100 370.5 342 55.3
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.9e-100 370.2 342 55.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 5.6e-100 368.6 365 54.8
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.8e-94 348.2 380 49.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.3e-92 342.4 370 49.2
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.4e-87 325.5 371 48.2
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.1e-82 309.7 378 46.3
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.2e-81 307.8 261 58.6
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.0e-81 307.0 372 46.2
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 2.6e-81 306.6 305 54.1
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 4.5e-81 305.8 457 41.4
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.9e-79 300.4 377 45.6
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.1e-74 283.1 353 46.5
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.0e-73 280.4 372 44.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 1.4e-71 274.2 381 43.3
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 3.2e-71 273.1 364 43.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 2.1e-67 260.4 351 42.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 3.8e-64 249.6 373 39.4
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 6.0e-62 242.3 376 38.8
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 9.7e-60 235.0 226 57.1
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 6.1e-54 215.7 200 56.0
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.3e-51 208.0 203 49.3
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 1.5e-44 184.5 179 57.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 5.3e-42 176.0 252 38.5
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.5e-39 167.2 243 38.3
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 8.0e-38 162.2 164 50.6
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.3e-35 154.8 139 54.7
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.7e-35 154.5 139 55.4
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.4e-34 151.4 300 30.3
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.9e-33 146.0 140 53.6
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 7.7e-33 145.6 145 50.3
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 8.5e-24 115.5 107 57.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.5e-23 114.8 96 55.2
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.2e-23 113.6 96 55.2
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.4e-23 112.1 96 53.1
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.1e-22 109.4 96 53.1
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.3e-19 101.7 101 49.5
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.4e-18 97.4 113 47.8
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 5.4e-18 96.3 353 23.8
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.0e-13 82.0 222 33.3
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 4.0e-13 80.1 73 52.1
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.3e-11 75.1 76 47.4
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 6.3e-11 72.8 58 58.6
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 6.3e-11 72.8 45 82.2
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.2e-10 68.9 101 42.6
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.2e-10 68.9 101 42.6
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.0e-09 67.8 58 69.0


User provided reference genes

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