Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 4.8e-170 601.3 350 100.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.6e-165 586.3 350 94.0
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.6e-152 543.1 352 88.1
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 4.1e-121 438.7 362 72.7
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.9e-118 429.9 367 72.2
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.7e-111 406.8 365 69.9
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 5.3e-76 288.9 341 62.5
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.2e-75 287.7 356 52.5
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 4.6e-72 275.8 311 58.2
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.6e-72 275.8 350 52.6
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.3e-71 274.2 377 49.3
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.9e-71 272.7 322 54.7
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.3e-70 269.6 353 54.7
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.7e-69 266.2 342 54.1
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 4.9e-66 255.8 348 48.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.4e-65 254.2 340 51.5
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.2e-64 251.1 373 50.9
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.7e-64 250.0 357 51.8
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.6e-64 249.2 353 52.4
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.0e-64 248.8 356 49.7
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.3e-63 247.7 351 48.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.1e-62 244.6 351 52.1
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 2.5e-62 243.4 354 48.9
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.4e-62 241.9 376 49.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.3e-61 241.1 356 46.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.6e-61 240.7 330 53.3
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.6e-61 240.7 350 47.7
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.2e-61 240.4 358 48.0
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 8.2e-61 238.4 341 50.1
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 8.2e-61 238.4 367 49.0
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.8e-60 237.3 342 50.9
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.1e-60 236.5 356 50.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.9e-60 235.3 352 51.1
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.5e-59 234.2 348 48.6
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.5e-59 234.2 350 47.4
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.5e-59 234.2 355 49.3
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.4e-59 233.0 362 46.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 7.7e-59 231.9 365 49.0
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.0e-58 231.5 327 47.4
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.7e-58 230.7 361 47.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 3.8e-58 229.6 382 48.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.8e-58 229.6 356 46.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 6.5e-58 228.8 345 49.0
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.5e-58 228.8 357 47.9
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 2.5e-57 226.9 335 47.8
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 2.5e-57 226.9 393 46.3
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 5.5e-57 225.7 341 49.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.2e-56 224.6 357 46.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 2.1e-56 223.8 327 46.2
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.7e-56 223.4 366 47.3
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 7.9e-56 221.9 366 47.3
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.4e-55 221.1 331 47.4
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.3e-55 220.3 395 46.6
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 5.1e-55 219.2 344 50.6
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 5.1e-55 219.2 356 47.2
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.5e-54 216.9 373 44.2
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.5e-54 216.9 355 46.2
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 2.5e-54 216.9 387 43.4
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 5.7e-54 215.7 361 45.7
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 9.7e-54 214.9 347 47.0
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.2e-53 213.8 416 45.9
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.1e-52 211.5 347 46.7
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.1e-52 211.5 365 47.7
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.4e-52 211.1 362 43.6
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.4e-52 210.3 351 46.4
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 4.1e-52 209.5 359 45.7
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 4.1e-52 209.5 355 45.9
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.3e-52 209.1 374 47.3
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 9.1e-52 208.4 426 46.5
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 5.0e-50 202.6 366 45.1
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 6.5e-50 202.2 358 43.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 8.5e-50 201.8 358 43.3
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 8.5e-50 201.8 364 45.3
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 8.5e-50 201.8 299 51.8
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 8.5e-50 201.8 333 45.3
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.4e-49 201.1 350 45.1
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.5e-49 200.3 344 45.9
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 3.2e-49 199.9 359 48.5
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 4.2e-49 199.5 358 43.0
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 4.2e-49 199.5 240 54.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.5e-49 199.1 384 41.9
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.2e-49 198.7 378 44.4
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-48 197.6 342 48.0
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.6e-48 196.4 364 42.0
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.7e-48 196.1 305 49.2
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.7e-48 196.1 376 43.1
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 6.1e-48 195.7 360 43.3
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.9e-48 195.3 361 44.6
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.4e-47 194.5 345 41.2
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.3e-47 193.7 344 44.2
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 3.0e-47 193.4 360 44.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 3.0e-47 193.4 360 44.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 3.0e-47 193.4 360 44.7
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 3.9e-47 193.0 345 44.3
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 5.1e-47 192.6 360 42.2
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 8.8e-47 191.8 359 46.8
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.6e-46 190.3 354 43.2
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.3e-45 188.0 354 44.9
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.7e-45 187.6 351 39.9
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 2.2e-45 187.2 326 46.0
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 2.8e-45 186.8 368 41.8
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 2.8e-45 186.8 357 43.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 3.7e-45 186.4 354 42.9
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.3e-45 185.7 321 45.2
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 8.2e-45 185.3 358 42.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.8e-44 184.1 371 42.0
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.8e-44 184.1 376 43.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.1e-44 183.3 321 44.9
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 9.1e-44 181.8 288 46.2
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.2e-43 181.4 356 43.0
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.9e-43 179.1 359 40.7
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.9e-42 176.8 372 37.6
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.9e-42 176.8 325 42.5
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.4e-41 174.5 367 40.9
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 8.8e-39 165.2 350 41.7
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.5e-38 164.5 372 38.7
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 2.0e-38 164.1 365 37.8
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 2.6e-38 163.7 272 44.5
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.3e-38 163.3 175 56.6
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 7.4e-38 162.2 313 40.3
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 9.7e-38 161.8 365 46.3
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.2e-37 160.6 334 43.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.8e-37 160.2 204 47.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.8e-37 159.5 356 37.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 8.2e-37 158.7 343 42.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 8.2e-37 158.7 352 38.1
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.8e-36 157.5 360 38.9
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.3e-36 156.0 210 49.5
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 7.0e-36 155.6 292 41.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 1.6e-35 154.5 318 42.8
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.5e-34 148.7 374 40.1
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.9e-33 147.5 175 52.0
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-33 147.5 373 39.7
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.6e-32 144.4 204 52.0
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.7e-32 143.7 393 35.9
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-31 141.0 320 38.8
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 8.8e-31 138.7 301 38.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 4.4e-30 136.3 355 34.9
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 5.3e-28 129.4 333 36.3
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 9.1e-28 128.6 350 37.1
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 5.9e-27 125.9 267 44.2
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.9e-26 123.6 175 48.6
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-23 115.2 131 51.9
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.8e-23 114.4 329 37.4
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 3.0e-23 113.6 326 35.9
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.2e-23 112.8 179 45.3
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.0e-22 110.9 218 41.3
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-22 110.2 314 39.5
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 9.8e-22 108.6 393 31.0
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.8e-20 104.4 202 45.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 7.7e-19 99.0 376 33.0
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.0e-18 96.3 197 38.6
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 8.6e-18 95.5 366 35.5
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 3.2e-12 77.0 62 64.5
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 9.2e-12 75.5 348 38.5
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.6e-11 74.7 79 57.0
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.0e-07 62.0 146 35.6
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.8e-07 59.3 94 43.6


User provided reference genes

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