Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 4.6e-97 357.8 175 100.0
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 3.0e-80 302.0 176 85.2
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 1.1e-69 266.9 146 90.4
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 1.8e-69 266.2 130 98.5
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 1.0e-56 223.8 137 78.8
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 2.6e-55 219.2 165 66.7
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 5.7e-55 218.0 165 64.8
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 2.2e-54 216.1 172 64.0
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 6.3e-54 214.5 173 62.4
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 3.1e-53 212.2 179 61.5
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 7.0e-53 211.1 177 62.7
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 1.6e-52 209.9 175 61.1
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 7.7e-52 207.6 157 63.7
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 7.7e-52 207.6 157 63.7
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 7.7e-52 207.6 143 70.6
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.0e-51 207.2 165 61.8
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 1.0e-51 207.2 165 63.6
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 1.0e-51 207.2 172 61.0
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 1.3e-51 206.8 167 64.1
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 1.3e-51 206.8 167 64.1
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 2.2e-51 206.1 168 63.1
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 1.5e-50 203.4 167 62.9
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.9e-50 203.0 169 58.0
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 2.5e-50 202.6 165 61.8
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 2.5e-50 202.6 175 60.0
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 3.2e-50 202.2 167 60.5
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 4.2e-50 201.8 167 62.9
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 5.5e-50 201.4 167 62.9
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 7.2e-50 201.1 166 64.5
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 7.2e-50 201.1 170 59.4
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 7.2e-50 201.1 167 62.3
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 1.2e-49 200.3 166 62.0
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.7e-49 199.1 137 70.1
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 2.7e-49 199.1 137 70.1
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 4.7e-49 198.4 181 60.8
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 8.0e-49 197.6 134 70.1
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 8.0e-49 197.6 168 60.1
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.0e-48 197.2 169 60.9
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 1.8e-48 196.4 167 61.7
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 2.3e-48 196.1 172 59.3
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 5.2e-48 194.9 134 69.4
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 6.8e-48 194.5 132 69.7
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 1.2e-47 193.7 171 59.1
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 2.0e-47 193.0 183 59.0
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 3.4e-47 192.2 167 59.9
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 3.4e-47 192.2 165 61.8
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 5.7e-47 191.4 165 58.8
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 9.8e-47 190.7 120 75.0
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 9.8e-47 190.7 168 60.1
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 1.7e-46 189.9 135 67.4
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 1.7e-46 189.9 132 68.9
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 2.8e-46 189.1 167 58.7
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.7e-46 188.7 168 57.7
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 4.9e-46 188.3 134 69.4
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 4.9e-46 188.3 134 69.4
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 1.4e-45 186.8 134 68.7
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 1.4e-45 186.8 134 68.7
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 1.4e-45 186.8 134 68.7
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 1.8e-45 186.4 166 60.2
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 3.1e-45 185.7 165 57.0
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 3.1e-45 185.7 161 60.9
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 5.4e-45 184.9 123 69.9
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 9.1e-45 184.1 132 67.4
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 2.0e-44 183.0 225 48.4
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 4.5e-44 181.8 199 52.8
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 5.9e-44 181.4 120 71.7
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 1.0e-43 180.6 126 67.5
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 1.7e-43 179.9 127 68.5
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 5.0e-43 178.3 128 66.4
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 8.6e-43 177.6 169 56.8
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 1.9e-42 176.4 173 54.9
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 4.2e-42 175.3 152 62.5
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 5.6e-42 174.9 115 72.2
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 7.2e-42 174.5 165 55.8
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.5e-42 174.1 123 66.7
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 1.8e-40 169.9 120 68.3
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 8.3e-38 161.0 124 62.1
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 1.8e-37 159.8 166 54.8
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 3.2e-37 159.1 143 57.3
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 5.4e-37 158.3 144 58.3
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 6.6e-35 151.4 146 55.5
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 8.6e-35 151.0 120 60.0
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 1.1e-34 150.6 163 52.1
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 2.1e-33 146.4 120 57.5
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 1.4e-32 143.7 91 72.5
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 3.7e-30 135.6 138 53.6
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 1.9e-29 133.3 122 59.8
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 2.7e-28 129.4 120 55.8
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 2.3e-27 126.3 90 65.6
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 6.6e-27 124.8 95 63.2
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 1.9e-26 123.2 114 57.0
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 1.6e-25 120.2 93 64.5
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 3.6e-25 119.0 87 66.7
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 1.2e-23 114.0 171 42.1
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 3.7e-22 109.0 82 72.0
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 8.3e-22 107.8 168 40.5
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 7.8e-20 101.3 78 65.4
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 1.3e-19 100.5 89 59.6
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 5.6e-18 95.1 48 89.6
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 2.0e-15 86.7 125 38.4
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 4.1e-13 79.0 45 77.8
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 6.0e-12 75.1 48 70.8
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 7.8e-12 74.7 122 36.1
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 3.9e-11 72.4 46 71.7
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 3.3e-10 69.3 84 52.4
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 8.1e-09 64.7 174 30.5
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.5e-07 60.5 114 29.8
Nitab4.5_0001409g0220 Nicotiana tabacum HOM05D007052 ORTHO05D008871 1.7e-06 57.0 44 68.2


User provided reference genes

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