Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.3e-191 672.9 343 100.0
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.1e-190 666.8 343 98.8
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.9e-188 661.8 343 97.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 5.4e-150 534.6 342 79.5
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.8e-136 488.0 347 72.6
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.0e-111 407.5 338 62.1
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 1.3e-111 407.1 338 62.4
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.7e-111 406.8 335 61.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.5e-111 404.8 338 62.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 5.5e-110 401.7 333 61.0
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 4.6e-109 398.7 345 59.7
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.9e-107 393.3 339 61.1
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.8e-106 388.7 336 61.6
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 5.3e-105 385.2 318 58.8
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 5.9e-104 381.7 341 54.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 6.7e-100 368.2 332 59.6
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 1.4e-97 360.5 315 61.9
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 6.9e-97 358.2 332 58.1
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 2.6e-96 356.3 342 54.1
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 3.4e-96 355.9 330 56.1
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.3e-95 354.0 332 57.8
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 5.0e-95 352.1 340 55.0
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 5.5e-94 348.6 314 54.8
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.5e-94 348.6 342 52.0
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.2e-93 347.4 302 60.3
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.6e-93 347.1 336 53.3
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 4.7e-93 345.5 337 53.4
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 6.1e-93 345.1 331 54.1
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 6.1e-93 345.1 336 53.0
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 6.7e-92 341.7 312 55.1
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 6.7e-92 341.7 342 51.8
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 8.8e-92 341.3 333 52.6
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 8.8e-92 341.3 342 52.3
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.5e-91 340.5 346 50.9
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.5e-91 340.5 343 51.9
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.5e-91 340.5 347 51.9
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 4.4e-91 339.0 314 54.5
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 4.4e-91 339.0 339 50.1
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 7.4e-91 338.2 344 51.7
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 4.8e-90 335.5 336 52.7
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 4.8e-90 335.5 342 54.7
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 8.2e-90 334.7 328 49.4
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.1e-89 334.3 338 52.7
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.8e-89 333.6 334 50.3
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.4e-89 333.2 348 51.1
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.3e-89 332.0 345 50.1
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 9.1e-89 331.3 336 51.8
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.5e-88 330.5 339 49.6
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 1.5e-88 330.5 330 51.8
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 2.0e-88 330.1 342 52.6
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.6e-88 329.7 338 50.3
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 3.5e-88 329.3 339 49.9
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 4.5e-88 328.9 336 50.9
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 5.9e-88 328.6 335 51.0
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 5.9e-88 328.6 339 50.4
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 7.7e-88 328.2 349 48.1
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 7.7e-88 328.2 349 49.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 7.7e-88 328.2 315 51.7
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.0e-87 327.8 335 52.2
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.2e-87 326.6 339 49.9
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.2e-87 326.6 341 48.7
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.2e-87 326.6 341 48.7
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.2e-87 326.6 341 48.7
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.2e-87 326.6 314 51.6
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 2.9e-87 326.2 340 48.5
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.8e-87 325.9 334 50.3
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 5.0e-87 325.5 341 50.4
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 5.0e-87 325.5 347 50.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 6.5e-87 325.1 343 49.6
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-86 324.3 349 49.9
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-86 324.3 349 49.9
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.4e-86 323.9 335 49.9
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 2.5e-86 323.2 339 50.1
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.5e-86 323.2 333 48.9
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 3.2e-86 322.8 334 49.7
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 5.5e-86 322.0 349 49.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 5.5e-86 322.0 349 49.6
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 5.5e-86 322.0 337 51.3
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.2e-85 320.9 337 50.7
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.7e-85 319.7 334 51.8
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 6.1e-85 318.5 315 51.4
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 8.0e-85 318.2 341 48.4
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-84 317.8 341 48.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-84 317.8 341 48.4
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 1.0e-84 317.8 337 50.4
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.4e-84 317.4 341 48.4
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.3e-84 316.6 334 47.9
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.9e-84 315.8 338 47.6
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 3.9e-84 315.8 338 47.6
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 5.2e-84 315.5 345 47.5
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 5.2e-84 315.5 332 50.0
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 6.7e-84 315.1 330 48.8
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 1.5e-83 313.9 344 48.3
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.3e-83 312.8 337 47.8
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 3.3e-83 312.8 348 48.6
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 7.4e-83 311.6 315 51.1
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.7e-82 310.5 347 48.7
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 8.2e-82 308.1 343 47.2
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 8.2e-82 308.1 342 49.1
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 8.2e-82 308.1 335 49.0
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.1e-81 307.8 336 47.6
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 3.1e-81 306.2 337 48.4
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 3.1e-81 306.2 281 59.4
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 7.0e-81 305.1 339 47.5
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.6e-80 303.9 342 46.5
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 2.9e-79 299.7 339 46.9
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.1e-78 297.7 326 46.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.5e-78 297.4 268 53.4
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.7e-77 293.1 191 74.9
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 4.7e-77 292.4 346 46.2
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 8.0e-77 291.6 341 45.5
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.8e-76 290.4 322 45.0
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.5e-75 287.3 342 46.5
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 9.7e-75 284.6 277 53.1
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 3.7e-74 282.7 192 70.8
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 5.3e-73 278.9 336 45.5
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 5.3e-73 278.9 329 47.1
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 9.1e-73 278.1 334 44.3
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.5e-72 275.8 334 44.6
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 2.2e-71 273.5 335 45.4
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 2.2e-71 273.5 309 46.9
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 6.5e-71 271.9 319 44.2
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 8.5e-71 271.6 350 45.7
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.9e-70 270.4 335 44.8
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 9.4e-70 268.1 335 45.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 9.4e-70 268.1 277 50.2
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.7e-69 265.8 327 46.5
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 6.8e-68 261.9 348 42.8
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.1e-65 254.6 335 40.0
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.1e-65 254.6 321 39.3
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.4e-65 253.4 189 65.1
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 9.1e-65 251.5 189 66.1
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 9.1e-65 251.5 332 38.0
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 3.5e-64 249.6 397 39.0
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 8.6e-63 245.0 232 54.7
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 1.1e-62 244.6 337 39.8
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.5e-62 244.2 333 38.7
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.5e-62 243.4 336 39.3
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.5e-62 243.4 317 41.3
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 4.2e-62 242.7 336 40.5
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 7.2e-62 241.9 326 42.0
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 7.2e-62 241.9 336 39.3
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 7.2e-62 241.9 280 47.1
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-61 241.1 338 39.1
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.2e-61 241.1 338 39.1
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.1e-61 240.4 341 40.5
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.4e-60 237.7 319 39.8
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 8.9e-60 235.0 283 47.0
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-57 227.3 275 44.4
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.3e-55 220.3 177 55.4
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.9e-55 219.5 189 55.6
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 8.6e-55 218.4 253 47.4
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-53 214.5 184 58.7
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.0e-53 211.8 221 47.5
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 5.8e-51 205.7 189 51.3
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 8.3e-50 201.8 321 36.4
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.9e-44 181.8 182 50.0
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.6e-40 171.0 332 32.8
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 4.6e-40 169.5 163 52.1
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 1.5e-38 164.5 227 43.6
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 3.6e-37 159.8 326 33.4
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 2.2e-34 150.6 215 40.0
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 6.8e-28 129.0 99 63.6
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 9.9e-27 125.2 106 59.4
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-25 121.3 91 60.4
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 2.1e-24 117.5 171 42.1
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 7.8e-24 115.5 172 37.8
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.4e-20 104.8 75 65.3
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 6.9e-20 102.4 157 38.2
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 3.4e-19 100.1 314 27.7
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 9.9e-19 98.6 89 52.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.3e-15 87.4 77 57.1
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 2.6e-11 73.9 59 55.9
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 4.5e-11 73.2 81 40.7
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 3.8e-10 70.1 49 69.4
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 6.4e-10 69.3 80 41.2
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-08 65.1 73 47.9
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 6.0e-08 62.8 75 38.7
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 3.3e-06 57.0 63 47.6


User provided reference genes

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