Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-99 366.3 190 100.0
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.2e-98 363.2 189 98.9
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 7.0e-83 310.8 192 87.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 8.1e-79 297.4 194 82.0
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 9.3e-59 230.7 176 75.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.9e-56 223.0 166 76.5
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.4e-52 208.0 201 63.2
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 3.5e-50 202.2 193 63.2
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.0e-45 186.4 188 59.6
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 5.8e-45 184.9 170 66.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 5.5e-43 178.3 183 57.9
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 5.1e-41 171.8 175 58.9
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.8e-39 165.2 185 56.2
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.2e-37 160.6 185 50.3
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.0e-36 157.5 184 53.3
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 2.9e-36 156.0 183 55.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 6.5e-36 154.8 187 54.5
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 6.5e-36 154.8 190 53.7
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 1.4e-35 153.7 203 52.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.2e-35 152.5 187 54.0
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 4.2e-35 152.1 179 52.0
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.5e-35 151.8 189 47.6
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 5.5e-35 151.8 189 54.5
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.3e-35 151.0 185 52.4
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.6e-34 150.2 186 52.7
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.6e-34 150.2 181 53.6
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.7e-34 149.4 184 50.5
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 3.5e-34 149.1 190 50.0
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.5e-34 149.1 188 48.9
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.5e-34 149.1 187 52.9
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.8e-33 146.7 187 49.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.5e-32 143.7 197 47.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.3e-32 142.5 185 48.6
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 5.7e-32 141.7 194 56.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 5.7e-32 141.7 191 51.3
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 9.6e-32 141.0 179 54.2
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.3e-31 140.6 186 47.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.3e-31 140.6 185 49.2
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.1e-31 139.8 179 49.2
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.1e-31 139.8 178 47.8
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-31 139.8 186 48.9
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.8e-31 139.4 179 49.2
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 3.7e-31 139.0 190 47.4
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 8.2e-31 137.9 192 52.1
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 8.2e-31 137.9 167 53.3
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.8e-30 136.7 187 50.3
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 3.1e-30 136.0 184 49.5
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 6.9e-30 134.8 189 47.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 2.0e-29 133.3 191 46.6
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.0e-29 133.3 189 49.2
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.6e-29 132.9 181 48.1
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 7.6e-29 131.3 189 47.6
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.0e-28 131.0 181 47.5
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.2e-28 129.8 186 46.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.2e-28 129.8 180 50.0
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.9e-28 129.4 180 48.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.8e-28 129.0 167 52.7
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 8.4e-28 127.9 180 45.6
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 8.4e-28 127.9 184 48.4
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-27 127.1 189 50.3
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.5e-27 126.3 185 46.5
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.2e-27 125.9 188 49.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.5e-27 125.2 186 48.4
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 7.2e-27 124.8 150 52.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 9.3e-27 124.4 182 46.2
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 9.3e-27 124.4 186 48.4
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.6e-26 123.6 195 47.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.6e-26 123.6 185 47.6
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-26 123.2 186 46.2
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.1e-26 123.2 182 47.8
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.7e-26 122.9 185 47.0
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.1e-26 121.7 154 55.8
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 6.1e-26 121.7 191 45.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.9e-26 121.3 187 48.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.0e-25 120.9 170 48.8
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.0e-25 120.9 177 46.9
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.3e-25 119.8 189 45.0
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 3.0e-25 119.4 179 46.4
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.5e-24 116.3 187 44.9
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.5e-24 116.3 195 43.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.3e-24 115.5 186 45.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.1e-22 110.9 200 43.5
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.1e-22 110.9 178 42.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.4e-22 110.5 173 46.8
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 5.3e-22 108.6 183 42.1
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 6.9e-22 108.2 135 53.3
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 9.0e-22 107.8 169 47.9
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 9.0e-22 107.8 194 39.7
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 4.5e-21 105.5 176 44.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 5.9e-21 105.1 135 52.6
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 5.9e-21 105.1 181 39.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.9e-21 105.1 186 43.0
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-20 104.0 172 45.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.3e-20 104.0 172 45.3
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.2e-20 103.2 191 39.8
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.8e-20 102.4 187 46.0
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.8e-20 102.4 191 39.3
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 5.0e-20 102.1 134 51.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 8.5e-20 101.3 183 40.4
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 8.5e-20 101.3 190 42.1
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.1e-19 100.9 160 45.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.2e-19 99.4 177 40.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 4.2e-19 99.0 179 43.0
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 7.2e-19 98.2 187 41.7
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 9.4e-19 97.8 131 50.4
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.1e-18 96.7 171 43.9
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 4.6e-18 95.5 178 43.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 4.6e-18 95.5 178 43.3
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 7.9e-18 94.7 178 41.0
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.0e-17 94.4 181 40.9
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-17 94.4 178 43.8
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.0e-17 94.4 180 42.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.0e-17 92.8 172 40.7
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 3.9e-17 92.4 186 40.3
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.1e-17 92.0 183 42.1
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 6.7e-17 91.7 184 41.3
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 8.8e-17 91.3 178 42.1
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 2.5e-16 89.7 138 50.0
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.3e-16 89.0 127 50.4
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 5.7e-16 88.6 184 40.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.2e-15 86.7 172 42.4
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.8e-15 86.3 201 38.8
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 2.8e-15 86.3 181 39.2
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 4.8e-15 85.5 187 36.9
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 4.8e-15 85.5 163 40.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 8.2e-15 84.7 167 40.7
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 8.2e-15 84.7 180 36.1
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 8.2e-15 84.7 178 37.1
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.1e-14 84.3 184 39.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.4e-14 84.0 193 37.3
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-14 83.6 187 35.8
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.8e-14 83.6 187 35.8
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.8e-14 83.6 157 42.0
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.1e-14 82.8 187 35.8
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 3.1e-14 82.8 179 37.4
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 4.1e-14 82.4 182 39.6
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 4.5e-13 79.0 89 52.8
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 5.9e-13 78.6 174 37.9
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 7.7e-13 78.2 174 37.9
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.7e-12 77.0 188 35.1
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.7e-12 77.0 170 42.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 5.0e-12 75.5 163 37.4
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 5.0e-12 75.5 82 50.0
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.4e-11 73.9 181 35.9
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-11 73.2 180 35.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.2e-11 72.4 179 36.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 4.7e-10 68.9 56 66.1
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 1.4e-09 67.4 105 44.8
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.0e-09 66.2 154 35.1
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 5.1e-09 65.5 176 29.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 2.6e-08 63.2 201 33.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 9.7e-08 61.2 168 31.5
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 9.7e-08 61.2 164 32.9
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.7e-07 60.5 79 46.8
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 3.7e-07 59.3 173 34.7
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 3.1e-06 56.2 192 30.2
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 3.1e-06 56.2 57 57.9
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 5.3e-06 55.5 155 33.5


User provided reference genes

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