Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.9e-116 422.5 213 100.0
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 9.2e-116 420.2 213 99.5
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 3.1e-111 405.2 216 95.8
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.2e-94 350.1 213 82.2
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 5.7e-81 304.7 197 77.2
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.6e-80 303.1 197 76.6
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 8.2e-80 300.8 213 71.4
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 5.8e-78 294.7 205 70.7
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 2.2e-77 292.7 203 70.4
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 8.4e-77 290.8 191 73.8
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 1.4e-76 290.0 214 68.2
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 1.4e-76 290.0 208 70.7
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.4e-76 290.0 213 68.1
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 3.2e-76 288.9 197 72.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 4.2e-76 288.5 208 68.3
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 4.2e-76 288.5 203 67.5
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 1.6e-75 286.6 195 71.3
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 1.6e-75 286.6 214 67.3
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.6e-75 286.6 192 72.4
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 2.7e-75 285.8 218 66.1
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 4.6e-75 285.0 191 71.2
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 6.1e-75 284.6 191 71.7
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.3e-74 283.5 194 71.1
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.8e-74 283.1 197 68.5
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.3e-74 282.7 203 69.0
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 3.9e-74 282.0 205 67.8
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 3.9e-74 282.0 181 74.0
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.7e-74 280.8 214 66.4
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 1.1e-73 280.4 218 67.0
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.9e-73 279.6 191 70.7
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.9e-73 279.6 188 73.4
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 2.5e-73 279.3 197 69.5
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.7e-73 278.1 198 69.2
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 9.7e-73 277.3 188 72.3
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 1.6e-72 276.6 194 69.6
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.6e-72 276.6 186 73.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.8e-72 275.8 186 73.7
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 3.7e-72 275.4 208 67.8
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 3.7e-72 275.4 204 66.7
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 4.8e-72 275.0 217 64.5
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 4.8e-72 275.0 219 65.3
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 8.2e-72 274.2 214 63.6
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.1e-71 273.9 191 68.6
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.4e-71 273.5 177 75.7
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-71 273.5 198 67.7
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 6.9e-71 271.2 201 65.7
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 6.9e-71 271.2 191 69.6
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 6.9e-71 271.2 213 65.7
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 9.0e-71 270.8 191 69.6
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.2e-70 270.4 192 68.2
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.2e-70 270.4 195 66.2
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 2.0e-70 269.6 220 61.8
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.0e-70 269.6 191 69.1
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 2.0e-70 269.6 191 69.6
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.6e-70 269.2 198 68.2
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 3.4e-70 268.9 197 66.5
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 5.9e-70 268.1 192 67.7
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 5.9e-70 268.1 216 63.0
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 5.9e-70 268.1 201 65.2
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 5.9e-70 268.1 201 65.2
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 7.7e-70 267.7 237 59.9
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.0e-69 267.3 199 66.3
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.3e-69 266.9 185 71.4
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 3.8e-69 265.4 208 64.4
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 3.8e-69 265.4 192 67.2
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.5e-69 264.6 206 66.5
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 8.5e-69 264.2 194 67.0
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-68 263.5 198 66.7
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 5.5e-68 261.5 211 62.6
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 7.2e-68 261.2 192 66.1
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.2e-67 260.4 204 63.2
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 2.7e-67 259.2 175 72.6
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.7e-67 259.2 191 66.5
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 4.6e-67 258.5 200 64.0
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 6.1e-67 258.1 186 66.7
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 3.0e-66 255.8 177 70.6
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 8.8e-66 254.2 195 60.0
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 8.8e-66 254.2 202 63.4
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-65 253.8 190 65.3
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.5e-65 253.4 200 65.0
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.0e-65 253.1 188 65.4
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 5.7e-65 251.5 210 60.5
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.7e-64 250.0 186 65.6
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.7e-64 250.0 187 65.8
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 4.8e-64 248.4 187 65.2
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 2.4e-63 246.1 186 65.1
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 4.1e-63 245.4 203 61.6
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.2e-62 243.8 201 62.7
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 5.0e-61 238.4 196 59.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.5e-60 236.1 145 77.2
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 5.5e-60 235.0 278 49.3
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 9.4e-60 234.2 194 62.9
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 9.4e-60 234.2 292 47.3
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.1e-59 231.5 188 63.8
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 3.9e-58 228.8 189 61.9
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.8e-56 222.6 189 60.3
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 4.8e-56 221.9 143 72.0
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 8.5e-53 211.1 189 55.6
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 4.2e-52 208.8 217 52.5
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 4.2e-52 208.8 189 55.0
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 4.0e-50 202.2 150 67.3
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 1.1e-47 194.1 156 62.2
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.6e-46 190.3 151 61.6
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-44 183.7 148 60.8
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-41 173.7 99 85.9
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.4e-34 150.6 98 71.4
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 3.7e-32 142.5 182 44.0
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 8.3e-32 141.4 172 44.2
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 4.1e-31 139.0 142 50.0
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.7e-30 136.3 172 43.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 4.3e-28 129.0 80 73.8
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 6.1e-27 125.2 79 74.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.3e-26 123.2 78 74.4
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.2e-25 120.9 134 50.7
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-25 120.9 79 72.2
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 1.7e-21 107.1 82 64.6
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 5.6e-20 102.1 218 34.4
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 2.2e-16 90.1 57 68.4
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 6.4e-16 88.6 57 66.7
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.1e-15 85.9 54 75.9
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.6e-14 84.0 77 54.5
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.2e-09 67.8 39 76.9
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 1.5e-09 67.4 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.3e-08 64.3 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.3e-08 64.3 39 76.9
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 2.4e-07 60.1 35 80.0
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 3.2e-07 59.7 103 39.8
Pp3c18_1310 Physcomitrium patens HOM05D029718 ORTHO05D026695 7.8e-06 55.1 98 32.7


User provided reference genes

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