Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 5.5e-264 913.7 443 100.0
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.0e-262 909.4 443 99.5
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 5.7e-253 877.1 443 96.4
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 6.4e-220 767.3 473 82.7
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 2.7e-210 735.3 418 85.6
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 6.7e-185 651.0 429 73.4
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.4e-182 642.5 407 74.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 9.0e-182 640.6 414 72.5
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.5e-181 639.8 414 72.7
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.7e-180 636.3 414 72.2
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 3.2e-179 632.1 433 70.4
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 4.2e-179 631.7 461 68.1
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.7e-178 629.0 410 73.4
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 4.6e-178 628.2 399 74.2
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 8.8e-177 624.0 420 71.4
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 2.5e-176 622.5 416 71.4
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 2.5e-176 622.5 435 69.2
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 5.7e-176 621.3 386 76.9
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.7e-175 619.8 387 75.5
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.7e-175 619.8 401 72.3
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.8e-175 619.0 419 71.1
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.7e-175 618.6 417 70.0
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 4.8e-175 618.2 411 72.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.3e-175 617.8 409 72.1
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 8.2e-175 617.5 412 70.6
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.1e-174 617.1 407 73.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 1.4e-174 616.7 397 72.3
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.8e-174 616.3 430 69.1
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 5.3e-174 614.8 398 72.6
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 9.1e-174 614.0 423 69.3
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.1e-174 614.0 428 70.1
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.5e-173 613.2 425 70.6
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.5e-173 611.7 440 66.6
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 4.5e-173 611.7 423 68.8
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 5.9e-173 611.3 413 69.5
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.3e-172 610.1 434 68.0
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.9e-172 609.0 414 71.3
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.9e-172 609.0 423 69.5
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 8.5e-172 607.4 421 69.1
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 8.5e-172 607.4 422 69.2
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.1e-171 607.1 403 69.7
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 1.9e-171 606.3 387 72.4
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 2.5e-171 605.9 432 68.1
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 2.5e-171 605.9 410 71.2
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.5e-171 605.9 414 70.3
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 3.2e-171 605.5 409 70.4
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 5.5e-171 604.7 404 71.3
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 4.7e-170 601.7 400 72.0
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 3.0e-169 599.0 371 74.9
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.1e-168 597.0 371 74.7
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 1.1e-168 597.0 415 68.9
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.5e-168 596.7 405 69.4
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.6e-168 595.9 401 70.8
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.2e-167 592.8 346 84.7
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 2.4e-166 589.3 425 68.5
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.4e-166 589.3 356 79.5
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.7e-164 583.2 403 67.7
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.2e-164 582.8 382 72.3
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.9e-164 582.4 385 70.4
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 3.8e-164 582.0 385 70.1
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 5.0e-164 581.6 384 72.1
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 6.5e-164 581.3 422 68.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 8.5e-164 580.9 406 67.5
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.1e-163 580.5 425 64.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 4.2e-163 578.6 421 67.0
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.2e-162 577.0 403 69.0
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.7e-162 575.9 438 66.4
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 3.6e-162 575.5 407 66.6
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 3.6e-162 575.5 380 70.5
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 3.6e-162 575.5 417 67.4
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 3.6e-162 575.5 380 70.3
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.0e-161 573.9 397 68.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 3.0e-161 572.4 381 70.1
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 3.0e-161 572.4 381 70.1
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 6.7e-161 571.2 401 67.6
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.1e-160 570.5 404 65.8
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.6e-160 569.3 394 69.5
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 5.7e-160 568.2 383 69.7
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 9.7e-160 567.4 426 63.1
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 3.7e-159 565.5 384 69.3
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.5e-155 553.5 432 63.7
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 4.2e-155 552.0 356 74.4
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.2e-155 551.2 432 64.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 9.4e-155 550.8 367 71.4
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 3.0e-153 545.8 410 65.6
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.2e-151 539.7 379 67.0
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 7.0e-150 534.6 431 60.3
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.7e-141 506.1 367 68.1
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 3.8e-140 502.3 416 60.6
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 2.6e-136 489.6 410 58.0
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 4.1e-134 482.3 388 59.5
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 2.7e-133 479.6 365 63.3
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 4.3e-131 472.2 407 56.0
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.0e-129 467.6 366 62.6
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 3.1e-129 466.1 396 59.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 3.4e-128 462.6 322 68.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.4e-126 457.2 414 58.7
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 3.9e-124 449.1 299 74.2
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.1e-122 443.4 379 55.9
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.9e-118 430.3 299 69.6
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 3.6e-114 416.0 439 48.5
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.1e-110 404.4 430 49.1
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.1e-89 334.7 245 66.1
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.0e-88 330.5 262 62.2
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.2e-87 327.0 278 57.2
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.3e-83 312.8 179 81.6
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 9.0e-81 305.1 415 41.4
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.4e-80 303.1 301 52.8
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-77 294.7 167 81.4
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-77 294.7 167 81.4
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 2.5e-75 287.0 449 41.4
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.1e-73 281.6 390 41.0
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-66 258.1 146 81.5
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 7.2e-54 215.7 215 54.9
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.1e-53 214.2 127 81.1
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 9.7e-51 205.3 142 68.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.9e-48 196.1 138 73.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.2e-44 183.0 99 83.8
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 3.3e-43 180.3 123 65.0
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.3e-42 178.3 302 36.4
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.9e-38 164.5 111 71.2
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.0e-35 154.5 90 77.8
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 7.5e-35 152.5 100 69.0
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 4.2e-30 136.7 126 54.0
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 6.8e-28 129.4 81 66.7
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 5.6e-22 109.8 160 41.2
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.3e-15 87.8 124 37.9
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 2.3e-15 87.8 211 33.6
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 7.0e-09 66.2 235 24.7
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 7.0e-09 66.2 70 48.6
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.0e-08 64.7 268 24.6
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 4.6e-08 63.5 215 26.5
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 6.0e-08 63.2 246 24.8
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 1.3e-07 62.0 238 25.6
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 3.0e-07 60.8 238 25.2
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 3.9e-07 60.5 266 24.1
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 8.6e-07 59.3 238 25.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.5e-06 58.5 229 24.5
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.5e-06 58.5 254 24.0
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 1.9e-06 58.2 238 25.2
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.9e-06 58.2 307 22.8
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 2.5e-06 57.8 357 24.9
Nitab4.5_0000295g0130 Nicotiana tabacum HOM05D002999 ORTHO05D003137 2.5e-06 57.8 277 23.8
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 3.3e-06 57.4 278 22.3
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 3.3e-06 57.4 249 25.3
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla HOM05D002999 ORTHO05D003137 3.3e-06 57.4 238 24.8
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 4.3e-06 57.0 288 23.6
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 4.3e-06 57.0 278 22.3
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 5.6e-06 56.6 204 24.5
Manes.05G070800 Manihot esculenta HOM05D002999 ORTHO05D003137 7.3e-06 56.2 284 22.5
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 9.5e-06 55.8 278 22.3
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 9.5e-06 55.8 278 22.3


User provided reference genes

Program Settings