Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1524.6 770 100.0
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1514.6 770 99.4
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 0.0e+00 1426.0 773 93.1
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1379.0 830 85.2
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 0.0e+00 1351.3 769 88.9
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 0.0e+00 1330.9 772 87.3
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1179.5 777 75.3
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1141.3 776 73.1
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1140.9 776 72.9
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1129.0 776 72.7
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1117.4 777 71.3
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1106.3 777 71.4
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1105.5 779 71.0
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1104.4 778 71.6
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1103.6 775 71.1
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1101.3 780 70.8
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1100.5 777 70.5
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1100.5 775 71.1
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1097.0 778 69.8
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1095.5 775 70.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1093.6 795 69.9
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 779 71.1
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1088.9 773 70.6
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1088.9 786 69.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 0.0e+00 1083.2 775 69.9
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1082.4 868 65.3
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1078.5 776 69.1
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1077.8 778 68.5
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 5.3e-312 1074.7 782 68.2
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.1e-311 1072.8 778 69.0
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 7.9e-311 1070.1 780 68.6
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 6.8e-310 1067.0 777 67.8
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.8e-310 1066.6 774 69.9
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 776 69.8
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 4.4e-309 1064.3 768 70.3
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.3e-308 1062.8 778 68.0
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 6.4e-308 1060.4 792 66.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 3.2e-307 1058.1 777 68.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 5.4e-307 1057.4 781 67.9
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.7e-306 1055.0 779 69.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 7.8e-306 1053.5 779 69.3
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 3.9e-305 1051.2 776 68.3
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 6.6e-305 1050.4 779 68.2
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 3.3e-304 1048.1 775 67.1
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.3e-304 1047.7 776 67.8
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.1e-302 1043.1 777 66.7
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 1.8e-302 1042.3 778 67.6
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 2.3e-302 1042.0 780 67.1
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 4.1e-299 1031.2 781 65.4
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 7.8e-298 1026.9 780 67.6
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.1e-296 1023.1 784 67.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.1e-294 1016.5 880 60.1
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 4.0e-294 1014.6 806 63.3
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 8.9e-294 1013.4 771 65.8
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.2e-293 1013.1 774 66.8
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 7.5e-293 1010.4 879 60.8
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.7e-292 1009.2 747 67.5
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 3.7e-292 1008.1 780 65.4
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 8.3e-292 1006.9 778 64.8
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.1e-290 1002.3 777 65.5
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 6.0e-290 1000.7 778 64.8
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.0e-289 1000.0 778 64.3
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.5e-288 996.1 776 64.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.9e-288 995.7 781 63.8
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 2.5e-288 995.3 778 64.4
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.6e-287 991.5 774 64.1
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.4e-286 989.6 778 64.3
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.4e-286 989.6 776 63.7
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.8e-286 989.2 774 64.2
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.8e-286 989.2 783 64.5
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.8e-286 989.2 778 64.7
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 5.2e-286 987.6 785 62.9
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.5e-285 986.1 783 64.5
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 7.6e-285 983.8 774 63.4
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 9.9e-285 983.4 776 63.3
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 7.1e-283 977.2 779 63.7
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.6e-277 958.7 797 61.4
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 3.2e-275 951.8 776 62.1
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.6e-274 949.5 783 63.1
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.3e-273 946.4 774 64.0
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 4.2e-267 924.9 721 66.4
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 7.9e-266 920.6 740 63.9
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.3e-263 913.3 745 61.6
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 2.5e-256 889.0 791 58.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 3.4e-253 878.6 782 58.3
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 9.7e-248 860.5 772 59.3
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.2e-221 773.9 768 52.9
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 8.3e-215 751.1 548 70.3
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.9e-203 713.4 501 70.5
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.8e-201 704.9 537 65.7
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.0e-188 662.9 479 70.6
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 9.8e-184 647.9 770 48.6
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-174 617.1 429 69.9
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.4e-169 600.1 595 54.8
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 3.4e-160 569.7 797 41.7
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.1e-157 560.5 795 42.0
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 1.3e-148 531.2 514 57.2
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-142 510.4 398 65.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.9e-137 492.3 507 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 3.3e-115 420.2 751 35.3
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.5e-107 394.8 835 32.8
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.6e-104 384.8 441 50.6
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 5.2e-100 369.8 446 48.7
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 9.1e-97 359.0 377 50.9
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.9e-87 327.4 190 76.3
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.7e-85 320.1 259 63.3
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 8.0e-85 319.3 378 48.7
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.1e-73 280.4 391 40.2
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.2e-72 278.9 266 54.5
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-72 278.5 211 66.4
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.0e-71 275.8 227 59.0
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.5e-59 235.3 763 27.1
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 2.2e-42 178.3 183 57.9
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.2e-40 172.6 322 35.7
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 7.4e-38 163.3 224 41.1
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.2e-35 156.0 487 26.3
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.6e-35 154.8 161 52.2
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 4.9e-34 150.6 505 24.0
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 3.2e-33 147.9 104 65.4
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-31 142.5 260 35.8
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.8e-31 142.1 511 24.3
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.0e-31 141.4 83 77.1
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.3e-30 137.9 83 77.1
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.1e-29 135.2 90 75.6
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.8e-29 134.0 86 73.3
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 4.8e-29 134.0 71 81.7
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 6.2e-29 133.7 138 55.1
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.3e-28 130.6 83 73.5
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.9e-26 124.0 78 73.1
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.9e-26 124.0 61 88.5
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-25 122.5 92 60.9
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 5.5e-25 120.6 109 53.2
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 4.6e-24 117.5 61 83.6
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.0e-23 116.3 109 52.3
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-23 115.9 84 69.0
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.3e-23 115.2 105 54.3
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 6.7e-23 113.6 346 32.1
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 7.4e-22 110.2 61 80.3
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.5e-19 102.4 61 75.4
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.1e-17 96.3 77 63.6
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.9e-17 95.5 57 80.7
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.2e-17 94.7 73 64.4
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 5.5e-17 94.0 65 69.2
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 9.3e-17 93.2 78 56.4
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.2e-16 92.8 62 64.5
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.7e-15 87.0 83 55.4
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-14 85.5 79 58.2
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.3e-14 84.3 71 59.2
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.2e-13 80.1 60 61.7
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.1e-12 78.2 60 63.3
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.7e-10 72.4 80 46.2
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 6.1e-08 63.9 47 70.2
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-07 62.8 83 43.4
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.8e-07 62.4 31 87.1


User provided reference genes

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