Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 2.1e-188 662.1 319 100.0
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.1e-186 656.4 319 98.7
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.5e-167 591.3 319 88.4
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.7e-164 581.3 319 86.5
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 5.4e-160 567.8 318 84.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.0e-160 567.4 319 83.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.7e-159 565.5 319 83.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 5.0e-158 561.2 319 84.3
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.9e-157 559.3 318 83.0
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 2.5e-157 558.9 318 82.7
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.3e-157 558.5 318 84.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 7.2e-157 557.4 317 82.3
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.6e-156 555.1 317 81.7
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 8.0e-156 553.9 318 82.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.8e-155 552.7 315 81.9
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.3e-155 552.4 318 82.1
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.0e-155 552.0 318 81.4
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 8.9e-155 550.4 309 84.5
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 8.9e-155 550.4 309 84.5
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.5e-154 549.7 319 80.3
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 5.7e-154 547.7 315 81.0
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 9.8e-154 547.0 318 80.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 9.8e-154 547.0 318 80.2
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.3e-153 546.6 318 80.2
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.7e-153 546.2 315 81.0
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.2e-153 545.8 318 79.6
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.7e-153 545.0 319 79.3
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 4.9e-153 544.7 318 80.5
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.3e-153 543.9 317 81.4
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.1e-152 543.5 319 79.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.4e-152 543.1 318 79.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-152 542.7 316 79.4
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.4e-152 542.3 315 79.4
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.4e-152 542.3 314 80.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.4e-152 542.3 318 80.2
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 3.2e-152 542.0 318 79.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 5.4e-152 541.2 319 79.3
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 5.4e-152 541.2 314 80.6
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 9.2e-152 540.4 315 79.0
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-151 540.0 314 79.3
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-151 539.7 317 79.5
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-151 539.7 317 79.5
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.6e-151 539.7 317 79.5
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-151 539.3 317 79.2
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 2.0e-151 539.3 317 79.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 2.0e-151 539.3 318 78.9
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.7e-151 538.9 315 79.7
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 4.5e-151 538.1 318 78.0
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 7.8e-151 537.3 315 79.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 2.3e-150 535.8 309 81.2
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.3e-150 535.8 308 81.8
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.9e-150 535.4 343 74.9
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.9e-150 535.4 315 78.7
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 5.0e-150 534.6 317 79.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 6.6e-150 534.3 319 79.0
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 6.6e-150 534.3 321 76.9
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 8.6e-150 533.9 318 77.4
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 8.6e-150 533.9 318 78.0
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 8.6e-150 533.9 318 77.7
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.1e-149 533.5 308 80.8
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.5e-149 533.1 318 77.4
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.5e-149 533.1 318 78.0
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.5e-149 533.1 318 77.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.9e-149 532.7 316 78.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 5.6e-149 531.2 319 77.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.6e-149 531.2 318 77.7
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 5.6e-149 531.2 318 78.6
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 5.6e-149 531.2 318 76.7
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.3e-149 530.8 318 77.7
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 7.3e-149 530.8 318 78.3
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 9.5e-149 530.4 318 77.4
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.6e-148 529.6 320 76.6
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 2.8e-148 528.9 318 76.7
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 4.7e-148 528.1 318 78.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 4.7e-148 528.1 308 78.6
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 6.1e-148 527.7 317 79.2
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 8.0e-148 527.3 321 76.6
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 8.0e-148 527.3 317 78.9
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 8.0e-148 527.3 315 79.0
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.4e-147 526.6 315 78.4
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.8e-147 526.2 320 77.8
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 4.0e-147 525.0 308 78.2
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 5.2e-147 524.6 333 75.4
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.0e-146 522.7 335 74.9
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.4e-146 521.9 311 77.5
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.4e-146 521.9 316 77.2
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 3.4e-146 521.9 318 74.8
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.4e-146 521.5 315 77.1
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 5.8e-146 521.2 315 76.8
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 9.8e-146 520.4 305 78.7
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.3e-145 520.0 318 75.5
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.7e-145 518.5 315 76.5
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.9e-145 518.1 318 77.0
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 8.3e-145 517.3 319 74.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.4e-144 515.8 308 77.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 5.4e-144 514.6 319 74.6
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 7.0e-144 514.2 319 74.3
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.6e-143 513.1 345 72.2
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.5e-143 511.9 320 74.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 4.6e-143 511.5 302 77.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 7.8e-143 510.8 318 73.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.3e-142 510.0 315 74.3
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.7e-142 509.6 316 76.3
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.5e-141 505.8 322 73.9
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.3e-141 505.4 308 75.6
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.2e-140 503.4 319 73.7
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.2e-140 501.1 318 75.2
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-139 499.6 315 72.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 2.3e-139 499.2 318 73.6
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.4e-138 495.0 264 90.5
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 3.7e-137 491.9 307 73.0
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.4e-137 491.1 319 73.4
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 7.1e-136 487.6 318 72.6
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.2e-135 486.9 304 71.1
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 7.3e-133 477.6 287 78.7
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.3e-133 477.6 305 74.1
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.2e-132 474.6 324 71.6
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 8.9e-131 470.7 281 79.0
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 4.4e-130 468.4 275 79.3
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 9.9e-130 467.2 325 70.2
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.4e-128 463.4 314 69.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.9e-128 463.0 315 68.9
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-125 453.8 257 82.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-125 453.8 257 82.1
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 4.3e-125 451.8 318 69.5
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 9.6e-125 450.7 302 69.9
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.2e-124 450.3 275 77.8
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.0e-123 445.3 287 76.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 7.8e-119 431.0 265 74.7
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.3e-118 430.3 296 64.9
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 9.6e-117 424.1 318 61.0
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 8.1e-116 421.0 241 82.2
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 9.0e-115 417.5 307 62.9
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 5.4e-112 408.3 329 58.7
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.6e-111 406.8 265 73.6
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 4.8e-108 395.2 301 60.5
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 4.5e-106 388.7 246 77.6
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 3.0e-102 375.9 265 70.9
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 5.1e-102 375.2 296 59.8
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 6.7e-102 374.8 306 60.5
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.8e-100 369.4 237 71.3
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.3e-97 360.5 224 76.8
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.1e-88 330.9 237 66.7
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 6.7e-86 321.6 242 66.9
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.7e-86 321.6 196 76.5
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 7.4e-85 318.2 196 74.5
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 3.7e-84 315.8 174 85.6
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-75 287.7 342 47.1
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.7e-73 280.4 346 42.8
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.2e-72 276.2 196 71.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.9e-70 269.2 217 64.1
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 7.4e-69 265.0 295 48.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.8e-67 260.4 322 42.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.1e-64 251.1 304 44.1
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 7.7e-50 201.8 123 75.6
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.0e-49 201.4 153 66.0
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.3e-44 182.2 283 39.9
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 9.5e-40 168.3 122 68.0
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 6.8e-38 162.2 92 82.6
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 6.8e-38 162.2 129 63.6
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-37 161.4 90 83.3
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.6e-37 160.2 94 86.2
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 4.4e-37 159.5 90 82.2
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 7.5e-37 158.7 129 62.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 6.4e-36 155.6 129 61.2
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.2e-31 141.4 116 68.1
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 4.9e-28 129.4 97 69.1
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 5.4e-27 125.9 66 86.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-25 121.7 131 51.1
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.1e-24 118.2 71 74.6
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.5e-24 117.9 75 70.7
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-24 116.7 90 65.6
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 2.1e-23 114.0 309 27.8
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 8.9e-22 108.6 63 76.2
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.1e-19 99.8 61 77.0
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 4.3e-16 89.7 51 78.4
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 9.5e-16 88.6 47 89.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 2.8e-15 87.0 245 28.2
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.6e-13 80.5 45 82.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 6.4e-12 75.9 44 77.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 6.4e-12 75.9 44 77.3
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 8.4e-12 75.5 41 82.9
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 3.9e-09 66.6 39 79.5
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 5.6e-08 62.8 40 70.0
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 9.6e-08 62.0 33 87.9
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 3.1e-06 57.0 77 36.4


User provided reference genes

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