Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 1.2e-69 266.5 146 100.0
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 6.0e-66 254.2 146 95.9
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 3.1e-54 215.3 155 80.0
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 3.9e-33 145.2 148 66.2
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.3e-28 130.2 142 63.4
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 5.5e-27 124.8 101 71.3
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 2.2e-23 112.8 153 49.7
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 2.8e-23 112.5 146 51.4
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 6.3e-23 111.3 165 51.5
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 8.2e-23 110.9 153 53.6
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.1e-22 110.5 146 55.5
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.1e-22 110.5 86 69.8
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 1.8e-22 109.8 140 57.1
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.8e-22 109.8 151 51.0
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 3.1e-22 109.0 147 53.7
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 4.1e-22 108.6 147 52.4
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 7.0e-22 107.8 98 67.3
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 7.0e-22 107.8 154 50.6
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 9.1e-22 107.5 155 47.1
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.5e-21 106.7 86 68.6
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 1.5e-21 106.7 162 49.4
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 2.0e-21 106.3 106 62.3
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 2.6e-21 105.9 156 48.1
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 2.6e-21 105.9 146 51.4
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 2.6e-21 105.9 90 68.9
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 4.5e-21 105.1 97 56.7
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 7.7e-21 104.4 106 61.3
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 1.0e-20 104.0 149 43.6
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 1.3e-20 103.6 157 47.8
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.3e-20 103.6 163 48.5
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 1.7e-20 103.2 100 62.0
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 2.2e-20 102.8 106 56.6
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.2e-20 102.8 154 46.8
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 3.8e-20 102.1 127 55.9
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 5.0e-20 101.7 108 58.3
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 5.0e-20 101.7 161 49.1
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 8.5e-20 100.9 150 52.0
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 1.1e-19 100.5 171 48.5
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 1.4e-19 100.1 101 61.4
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.9e-19 99.8 152 48.0
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 2.5e-19 99.4 147 53.1
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 2.5e-19 99.4 160 47.5
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 3.2e-19 99.0 100 61.0
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 3.2e-19 99.0 157 49.0
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 4.2e-19 98.6 142 54.9
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 5.5e-19 98.2 103 54.4
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 7.2e-19 97.8 142 54.2
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 7.2e-19 97.8 142 54.2
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 7.2e-19 97.8 142 54.2
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 9.4e-19 97.4 161 47.8
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 9.4e-19 97.4 110 51.8
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 9.4e-19 97.4 113 57.5
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.2e-18 97.1 163 46.0
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 1.6e-18 96.7 142 54.2
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 1.6e-18 96.7 142 54.2
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 2.7e-18 95.9 157 48.4
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 2.7e-18 95.9 157 48.4
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 2.7e-18 95.9 162 46.9
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 2.7e-18 95.9 152 49.3
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 2.7e-18 95.9 152 49.3
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 3.6e-18 95.5 120 55.0
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 4.7e-18 95.1 122 51.6
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 6.1e-18 94.7 63 66.7
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 6.1e-18 94.7 63 66.7
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 8.0e-18 94.4 157 46.5
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 1.0e-17 94.0 63 66.7
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 1.4e-17 93.6 63 66.7
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 1.4e-17 93.6 63 66.7
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 1.8e-17 93.2 152 51.3
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 1.8e-17 93.2 110 59.1
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 2.3e-17 92.8 156 46.2
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 2.3e-17 92.8 123 45.5
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 2.3e-17 92.8 108 56.5
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 3.0e-17 92.4 120 55.8
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 3.0e-17 92.4 143 53.8
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 3.0e-17 92.4 101 60.4
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 3.9e-17 92.0 155 47.7
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 3.9e-17 92.0 155 47.7
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 3.9e-17 92.0 155 47.7
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 3.9e-17 92.0 156 50.0
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 3.9e-17 92.0 158 44.9
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 5.2e-17 91.7 118 56.8
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 5.2e-17 91.7 152 50.0
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 5.2e-17 91.7 118 56.8
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 5.2e-17 91.7 157 45.2
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 5.2e-17 91.7 97 60.8
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 6.7e-17 91.3 152 50.0
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 8.8e-17 90.9 80 65.0
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.1e-16 90.5 157 45.2
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.5e-16 90.1 150 46.7
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.0e-16 89.7 111 52.3
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 2.0e-16 89.7 155 46.5
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 2.6e-16 89.4 158 47.5
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 2.6e-16 89.4 120 52.5
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.6e-16 89.4 111 52.3
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 2.6e-16 89.4 111 52.3
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 2.6e-16 89.4 152 48.0
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 4.4e-16 88.6 63 61.9
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 5.7e-16 88.2 120 54.2
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 5.7e-16 88.2 149 50.3
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 7.4e-16 87.8 158 48.1
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 9.7e-16 87.4 150 50.0
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 1.3e-15 87.0 109 53.2
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 1.3e-15 87.0 151 41.1
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.7e-15 86.7 92 62.0
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 1.7e-15 86.7 145 45.5
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 2.8e-15 85.9 93 60.2
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 2.8e-15 85.9 93 60.2
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 3.7e-15 85.5 154 43.5
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 4.8e-15 85.1 100 54.0
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 4.8e-15 85.1 109 55.0
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 6.3e-15 84.7 99 56.6
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 6.3e-15 84.7 101 56.4
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 6.3e-15 84.7 155 48.4
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.1e-14 84.0 95 53.7
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 4.1e-14 82.0 63 54.0
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 1.2e-13 80.5 58 58.6
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 1.2e-13 80.5 145 48.3
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 2.6e-13 79.3 77 66.2
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 2.6e-13 79.3 94 55.3
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 4.5e-13 78.6 92 58.7
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 5.9e-13 78.2 120 49.2
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 7.7e-13 77.8 146 36.3
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 1.0e-12 77.4 107 43.9
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.0e-12 77.4 161 42.9
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.0e-12 77.4 63 54.0
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 1.3e-12 77.0 102 47.1
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 2.2e-12 76.3 61 57.4
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.2e-12 76.3 61 57.4
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.2e-12 76.3 61 57.4
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 5.0e-12 75.1 146 41.8
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 5.0e-12 75.1 63 50.8
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 6.5e-12 74.7 126 48.4
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 3.2e-11 72.4 63 50.8
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 7.2e-11 71.2 63 55.6
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.2e-10 70.5 154 37.7
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 1.2e-10 70.5 95 45.3
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 1.6e-10 70.1 148 38.5
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.6e-10 70.1 152 42.8
Sp3g32430 Schrenkiella parvula HOM05D010802 ORTHO05D012953 3.6e-10 68.9 62 50.0
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 6.1e-10 68.2 145 34.5
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 3.0e-09 65.9 63 46.0
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 5.2e-09 65.1 57 49.1
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 5.2e-09 65.1 77 62.3
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 1.2e-08 63.9 82 45.1
CARHR051350 Cardamine hirsuta HOM05D004792 ORTHO05D005789 4.4e-08 62.0 159 33.3
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 4.4e-08 62.0 101 46.5
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 5.7e-08 61.6 94 41.5
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 5.7e-08 61.6 94 41.5
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 5.7e-08 61.6 94 41.5
Zm00001eb092170 Zea mays HOM05D004792 ORTHO05D005789 9.7e-08 60.8 107 37.4
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 1.3e-07 60.5 147 34.0
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 1.3e-07 60.5 147 34.0
Aa31LG8G16070 Aethionema arabicum HOM05D010802 ORTHO05D012953 1.7e-07 60.1 88 40.9
BcaC06g36515 Brassica carinata HOM05D010802 ORTHO05D012953 6.3e-07 58.2 61 44.3
A07p01670 Brassica napus HOM05D010802 ORTHO05D012953 6.3e-07 58.2 61 44.3
C07p03440 Brassica napus HOM05D010802 ORTHO05D012953 6.3e-07 58.2 61 44.3
BolC7t40743H Brassica oleracea HOM05D010802 ORTHO05D012953 6.3e-07 58.2 61 44.3
BraA07t27969Z Brassica rapa HOM05D010802 ORTHO05D012953 6.3e-07 58.2 61 44.3
BcaB07g31627 Brassica carinata HOM05D010802 ORTHO05D012953 1.1e-06 57.4 94 40.4
Zm00001eb299240 Zea mays HOM05D004792 ORTHO05D005789 1.4e-06 57.0 63 38.1
unitig_749.g13788 Utricularia gibba HOM05D000041 ORTHO05D008933 1.8e-06 56.6 74 58.1
Carub.0003s3326 Capsella rubella HOM05D010802 ORTHO05D012953 2.4e-06 56.2 105 35.2
AT2G19000 Arabidopsis thaliana HOM05D010802 ORTHO05D012953 7.0e-06 54.7 50 48.0


User provided reference genes

Program Settings