Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 0.0e+00 1818.5 952 100.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 0.0e+00 1558.1 835 97.5
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 0.0e+00 1527.7 957 86.5
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 0.0e+00 1403.3 964 80.5
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 0.0e+00 1343.6 932 79.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 0.0e+00 1301.6 969 76.1
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.3e-273 946.8 945 59.2
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 4.2e-269 931.8 973 57.5
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.8e-265 919.1 969 56.6
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.4e-259 900.2 967 55.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 3.0e-259 899.0 971 57.0
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 4.4e-258 895.2 1041 54.1
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 5.5e-253 878.2 973 54.5
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.4e-253 877.5 946 55.8
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 2.6e-250 869.4 975 53.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 6.3e-249 864.8 982 54.2
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.9e-246 855.9 819 60.8
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.1e-245 854.0 962 54.0
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.2e-244 850.5 1017 53.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 4.0e-243 845.5 1143 48.6
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.8e-240 836.6 1022 52.1
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.9e-238 828.9 986 53.5
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.5e-237 826.2 740 63.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.1e-236 823.2 978 51.6
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 3.6e-236 822.4 974 51.4
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 2.3e-235 819.7 948 55.4
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.0e-235 818.9 978 52.7
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.2e-232 809.3 789 58.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 3.2e-232 809.3 975 53.1
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 6.2e-228 795.0 999 50.6
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.7e-225 786.9 976 51.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.2e-225 786.6 810 57.9
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 4.9e-225 785.4 994 49.1
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.4e-224 783.1 971 51.0
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 7.8e-223 778.1 1052 49.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.0e-222 777.7 978 50.9
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.0e-222 777.7 1003 50.4
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.9e-222 775.8 863 54.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.1e-221 774.2 965 51.7
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.0e-219 765.8 999 49.5
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-218 761.5 1037 48.0
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-217 760.0 1073 48.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 3.7e-217 759.2 1028 48.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.9e-217 758.8 973 50.3
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.4e-216 757.3 1006 48.1
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.2e-215 754.2 964 50.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.2e-215 754.2 961 50.1
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.6e-215 753.8 968 49.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.6e-215 753.8 969 50.4
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 4.6e-215 752.3 1028 48.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-214 750.7 1030 47.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 5.1e-214 748.8 997 48.9
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-213 747.3 983 49.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.5e-213 747.3 974 49.5
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.9e-213 746.9 1024 47.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.3e-213 746.1 969 49.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 9.6e-213 744.6 964 49.2
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-212 744.2 983 49.3
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.6e-212 743.8 973 51.7
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.7e-212 742.3 1037 46.9
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-211 740.7 1039 47.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.4e-211 740.7 1010 47.3
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 3.1e-211 739.6 972 49.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 6.8e-211 738.4 1080 46.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-210 737.3 984 50.0
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.4e-208 730.7 971 48.8
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 2.4e-208 729.9 990 49.6
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.0e-206 724.5 1038 47.0
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.3e-206 724.2 1064 46.1
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 5.1e-206 722.2 990 47.9
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.6e-204 717.2 976 49.9
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 6.9e-203 711.8 1065 46.0
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.5e-202 710.7 973 49.4
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.9e-202 708.0 973 49.2
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 9.3e-200 701.4 844 51.7
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.2e-199 701.0 976 48.1
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 6.6e-198 695.3 1000 45.5
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.9e-197 693.7 786 51.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.4e-195 686.8 1066 45.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 4.5e-194 682.6 1079 44.4
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-193 681.0 911 49.5
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-193 681.0 911 49.5
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.9e-192 677.2 1066 45.0
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.6e-191 674.1 806 52.7
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 1.3e-190 671.0 796 50.4
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.5e-189 666.8 798 51.0
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.3e-188 664.5 951 47.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.1e-188 663.7 795 50.9
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 4.8e-188 662.5 796 50.6
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 4.8e-188 662.5 968 46.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 8.1e-188 661.8 1035 44.3
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 3.1e-187 659.8 981 46.0
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 4.0e-187 659.4 795 50.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 5.3e-187 659.1 804 50.4
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.0e-185 654.8 819 50.1
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.9e-185 652.5 824 49.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.2e-184 649.8 789 49.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.2e-184 649.4 797 49.4
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.6e-183 647.5 971 45.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.8e-182 644.0 784 50.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.8e-182 644.0 784 50.4
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.9e-182 642.9 788 50.8
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.1e-182 642.5 793 49.9
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.3e-181 639.4 991 43.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 8.2e-180 635.2 791 49.7
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.1e-179 634.8 855 47.7
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.4e-179 633.6 977 45.2
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 6.9e-179 632.1 785 48.9
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-178 630.6 793 49.3
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.6e-178 630.2 968 44.1
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.6e-178 628.6 963 43.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 8.4e-177 625.2 848 47.3
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.6e-175 620.9 788 49.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.5e-173 614.4 972 44.5
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.9e-173 614.0 991 42.5
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 6.9e-171 605.5 801 48.1
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 9.0e-171 605.1 796 48.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 6.5e-169 599.0 789 48.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.2e-167 594.7 810 47.8
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 7.9e-167 592.0 740 50.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.8e-163 580.9 772 47.9
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.2e-159 568.2 976 43.3
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.3e-157 560.1 805 44.7
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.3e-157 560.1 971 43.0
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.8e-155 554.3 988 41.9
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.2e-154 551.6 809 44.3
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.5e-154 550.1 799 44.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 6.5e-153 545.8 983 41.7
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.5e-145 519.2 998 41.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 3.7e-124 450.3 1064 35.5
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.4e-115 421.8 984 34.5
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.4e-115 421.8 984 34.5
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 9.5e-112 409.1 535 51.8
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.1e-105 386.7 667 40.9
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.6e-101 374.4 806 35.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 4.2e-91 340.5 424 48.6
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.1e-86 324.3 331 56.5
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 5.8e-85 320.1 961 29.4
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.3e-81 308.1 286 57.7
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-76 292.4 393 49.6
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.5e-72 278.1 329 53.8
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.2e-71 273.5 384 50.3
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.1e-62 244.6 251 57.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 2.0e-61 241.9 407 40.3
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.3e-49 201.8 260 44.2
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 4.5e-45 187.6 140 71.4
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.9e-41 174.5 477 33.5
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 8.5e-36 156.8 99 78.8
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.0e-33 148.3 179 48.0
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.5e-32 143.7 92 77.2
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 8.2e-31 140.2 200 48.5
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 8.5e-28 130.2 95 69.5
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.5e-27 129.4 169 46.2
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.5e-27 128.6 160 51.2
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 2.7e-26 125.2 88 72.7
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 5.7e-24 117.5 116 52.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 9.1e-22 110.2 79 70.9
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 9.5e-19 100.1 73 69.9
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.2e-18 99.8 89 55.1
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.4e-17 96.3 120 47.5
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 3.0e-17 95.1 57 84.2
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 5.2e-17 94.4 89 52.8
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 6.8e-17 94.0 69 66.7
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 3.4e-16 91.7 64 67.2
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 9.8e-16 90.1 65 67.7
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 3.1e-14 85.1 86 54.7
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.1e-14 84.7 60 78.3
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-13 82.8 106 44.3
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.0e-13 82.4 100 52.0
TAR624G1003 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.0e-12 80.1 106 51.9
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.5e-11 76.3 70 54.3
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.5e-11 75.5 92 46.7
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 9.5e-11 73.6 128 36.7
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.2e-10 73.2 200 34.5
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.4e-09 69.7 70 55.7
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.8e-09 69.3 309 26.9
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 5.2e-09 67.8 110 33.6
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 6.8e-09 67.4 62 54.8
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.5e-08 66.2 44 77.3
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-08 65.1 78 47.4
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 7.5e-08 63.9 64 46.9
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.9e-07 62.0 62 50.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.7e-07 61.6 51 58.8
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 7.0e-06 57.4 51 62.7


User provided reference genes

Program Settings