Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g022000 Solanum pennellii HOM05D000529 ORTHO05D010311 1.1e-72 276.6 144 100.0
Solyc02g077060.2 Solanum lycopersicum HOM05D000529 ORTHO05D010311 4.7e-71 271.2 144 97.2
PGSC0003DMG400010226 Solanum tuberosum HOM05D000529 ORTHO05D010311 2.5e-64 248.8 142 89.4
Nitab4.5_0000681g0070 Nicotiana tabacum HOM05D000529 ORTHO05D010311 6.3e-60 234.2 142 81.7
Nitab4.5_0024858g0010 Nicotiana tabacum HOM05D000529 ORTHO05D010311 1.0e-57 226.9 142 79.6
Peaxi162Scf00223g00031 Petunia axillaris HOM05D000529 ORTHO05D010311 1.2e-50 203.4 140 74.3
Nitab4.5_0002157g0040 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.4e-29 132.1 141 49.6
CAN.G836.51 Capsicum annuum HOM05D000529 ORTHO05D000472 2.9e-28 129.0 137 49.6
Peaxi162Scf00993g00326 Petunia axillaris HOM05D000529 ORTHO05D000472 2.4e-27 125.9 136 47.1
Solyc02g090380.4 Solanum lycopersicum HOM05D000529 ORTHO05D000472 5.4e-27 124.8 137 46.0
Sopen02g035080 Solanum pennellii HOM05D000529 ORTHO05D000472 5.4e-27 124.8 137 46.0
CAN.G836.52 Capsicum annuum HOM05D000529 ORTHO05D000472 2.1e-26 122.9 135 45.9
Nitab4.5_0007024g0050 Nicotiana tabacum HOM05D000529 ORTHO05D000472 9.6e-24 114.0 141 46.8
Nitab4.5_0009901g0030 Nicotiana tabacum HOM05D000529 ORTHO05D000472 2.6e-21 105.9 132 41.7
CAN.G702.21 Capsicum annuum HOM05D000541 ORTHO05D010311 5.8e-21 104.8 65 81.5
MSTRG.2907 Avicennia marina HOM05D000529 ORTHO05D000472 2.9e-20 102.4 135 43.0
Nitab4.5_0000806g0130 Nicotiana tabacum HOM05D000529 ORTHO05D000472 2.9e-20 102.4 115 47.0
Cc07_g05690 Coffea canephora HOM05D000529 ORTHO05D010311 3.8e-20 102.1 117 46.2
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 1.6e-18 96.7 130 40.0
Oeu036806.1 Olea europaea HOM05D000529 ORTHO05D000472 8.7e-17 90.9 129 36.4
Oeu036802.1 Olea europaea HOM05D000529 ORTHO05D000472 1.1e-16 90.5 129 36.4
Cc07_g05700 Coffea canephora HOM05D000529 ORTHO05D000472 1.5e-16 90.1 130 37.7
CSS0009502 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 9.6e-16 87.4 114 42.1
Migut.H00469 Erythranthe guttata HOM05D023126 ORTHO05D023801 1.3e-15 87.0 113 44.2
Oeu005309.1 Olea europaea HOM05D000529 ORTHO05D000472 2.1e-15 86.3 129 38.0
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 4.8e-15 85.1 125 39.2
Oeu036816.1 Olea europaea HOM05D000529 ORTHO05D036481 6.2e-15 84.7 129 34.9
CSS0017568 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 8.1e-15 84.3 117 38.5
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 1.4e-14 83.6 125 38.4
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.2e-13 80.5 117 38.5
PGR102G1677 Punica granatum HOM05D000529 ORTHO05D000472 2.6e-13 79.3 135 37.0
Rhsim08G0104400 Rhododendron simsii HOM05D000529 ORTHO05D000472 3.4e-13 79.0 114 37.7
Lsat_1_v5_gn_9_125101 Lactuca sativa HOM05D000529 ORTHO05D000472 1.3e-12 77.0 137 32.8
vmacro17917 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 1.3e-12 77.0 111 40.5
Ciclev10018897m.g Citrus clementina HOM05D000529 ORTHO05D000472 2.2e-12 76.3 117 36.8
Oeu036791.1 Olea europaea HOM05D000529 ORTHO05D010311 4.9e-12 75.1 126 36.5
Oeu001181.2 Olea europaea HOM05D000529 ORTHO05D000472 6.4e-12 74.7 102 38.2
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 6.4e-12 74.7 129 32.6
Dinv19756 Davidia involucrata HOM05D003049 ORTHO05D003531 1.1e-11 73.9 104 42.3
Rhsim08G0104500 Rhododendron simsii HOM05D000529 ORTHO05D000472 1.1e-11 73.9 129 31.0
Lj7A46T15 Lonicera japonica HOM05D000529 ORTHO05D000472 2.4e-11 72.8 129 31.8
TWI09G1247 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 2.4e-11 72.8 117 33.3
Manes.12G094100 Manihot esculenta HOM05D000529 ORTHO05D000472 3.2e-11 72.4 105 39.0
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 4.2e-11 72.0 118 33.9
Gorai.007G210000 Gossypium raimondii HOM05D000529 ORTHO05D000472 4.2e-11 72.0 113 38.1
HanXRQChr02g0048181 Helianthus annuus HOM05D000529 ORTHO05D000472 4.2e-11 72.0 139 31.7
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 4.2e-11 72.0 131 32.1
CiPaw.01G025000 Carya illinoinensis HOM05D000529 ORTHO05D000472 5.4e-11 71.6 118 33.9
Gohir.A11G189400 Gossypium hirsutum HOM05D000529 ORTHO05D000472 5.4e-11 71.6 113 38.1
Gohir.D11G196100 Gossypium hirsutum HOM05D000529 ORTHO05D000472 5.4e-11 71.6 113 38.1
HanXRQChr11g0331571 Helianthus annuus HOM05D000529 ORTHO05D000472 5.4e-11 71.6 123 35.0
Actinidia30857 Actinidia chinensis HOM05D000529 ORTHO05D000472 9.3e-11 70.9 77 42.9
DCAR_021433 Daucus carota HOM05D000529 ORTHO05D000472 9.3e-11 70.9 120 32.5
Cpa.g.sc6.402 Carica papaya HOM05D000529 ORTHO05D000472 1.6e-10 70.1 118 33.9
QL06p042786 Quercus lobata HOM05D000529 ORTHO05D000472 1.6e-10 70.1 126 33.3
QL06p042817 Quercus lobata HOM05D000529 ORTHO05D000472 1.6e-10 70.1 126 33.3
DCAR_010928 Daucus carota HOM05D000529 ORTHO05D000472 2.1e-10 69.7 125 34.4
Dinv42680 Davidia involucrata HOM05D000529 ORTHO05D010311 2.1e-10 69.7 106 41.5
CSS0019496 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 2.7e-10 69.3 114 34.2
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 2.7e-10 69.3 117 33.3
GSVIVG01003571001 Vitis vinifera HOM05D000529 ORTHO05D000472 3.5e-10 68.9 116 33.6
CiPaw.01G024000 Carya illinoinensis HOM05D000529 ORTHO05D000472 6.0e-10 68.2 83 43.4
CSS0009849 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 7.9e-10 67.8 114 33.3
DCAR_027670 Daucus carota HOM05D000174 ORTHO05D010311 7.9e-10 67.8 124 33.1
Duzib264G0020 Durio zibethinus HOM05D000529 ORTHO05D000472 1.0e-09 67.4 113 36.3
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 2.3e-09 66.2 117 35.9
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 2.3e-09 66.2 113 32.7
DCAR_015522 Daucus carota HOM05D000529 ORTHO05D000472 3.0e-09 65.9 136 29.4
Nn5g29352 Nelumbo nucifera HOM05D000529 ORTHO05D000472 3.9e-09 65.5 127 29.9
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 3.9e-09 65.5 107 34.6
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 3.9e-09 65.5 104 37.5
HanXRQChr07g0191761 Helianthus annuus HOM05D000529 ORTHO05D000472 6.7e-09 64.7 118 29.7
GSVIVG01003565001 Vitis vinifera HOM05D000529 ORTHO05D000472 6.7e-09 64.7 118 30.5
Lsat_1_v5_gn_9_123581 Lactuca sativa HOM05D000529 ORTHO05D000472 1.1e-08 63.9 139 30.9
HanXRQChr04g0095241 Helianthus annuus HOM05D000529 ORTHO05D000472 1.5e-08 63.5 124 32.3
Nn5g29351 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.5e-08 63.5 119 34.5
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 1.5e-08 63.5 124 32.3
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 1.5e-08 63.5 125 32.8
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 1.9e-08 63.2 95 37.9
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 1.9e-08 63.2 126 31.0
PGR102G1567 Punica granatum HOM05D000529 ORTHO05D000472 1.9e-08 63.2 129 34.1
Duzib264G0157 Durio zibethinus HOM05D000529 ORTHO05D000472 2.5e-08 62.8 116 34.5
Cfa003970 Carpinus fangiana HOM05D000529 ORTHO05D000472 4.3e-08 62.0 109 33.0
Haze_15450 Corylus avellana HOM05D000529 ORTHO05D000472 4.3e-08 62.0 108 33.3
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 5.6e-08 61.6 123 30.9
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 5.6e-08 61.6 116 31.9
CSS0015606 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 7.4e-08 61.2 114 36.0
Lsat_1_v5_gn_9_122021 Lactuca sativa HOM05D000529 ORTHO05D000472 9.6e-08 60.8 121 29.8
Potri.007G039300 Populus trichocarpa HOM05D000529 ORTHO05D000472 9.6e-08 60.8 116 31.0
Thecc.01G050400 Theobroma cacao HOM05D000529 ORTHO05D000472 9.6e-08 60.8 117 33.3
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 1.3e-07 60.5 141 29.8
Cfa003971 Carpinus fangiana HOM05D000529 ORTHO05D000472 1.3e-07 60.5 117 35.0
Lsat_1_v5_gn_9_123601 Lactuca sativa HOM05D000529 ORTHO05D000472 1.3e-07 60.5 138 29.7
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 1.3e-07 60.5 126 31.7
Sabra07G0035300 Salix brachista HOM05D000529 ORTHO05D000472 1.3e-07 60.5 112 31.2
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 2.1e-07 59.7 116 31.9
MD15G1277400 Malus domestica HOM05D000529 ORTHO05D000472 2.1e-07 59.7 131 35.1
MD15G1278000 Malus domestica HOM05D000529 ORTHO05D000472 2.1e-07 59.7 131 35.1
QL02p078112 Quercus lobata HOM05D000529 ORTHO05D000472 2.1e-07 59.7 111 34.2
QL93p0205_0245 Quercus lobata HOM05D000529 ORTHO05D000472 2.1e-07 59.7 111 34.2
HanXRQChr14g0430731 Helianthus annuus HOM05D000529 ORTHO05D000472 3.7e-07 58.9 125 31.2
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 4.8e-07 58.5 126 27.8
QL06p043050 Quercus lobata HOM05D000529 ORTHO05D000472 4.8e-07 58.5 124 31.5
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 4.8e-07 58.5 135 29.6
GSVIVG01003555001 Vitis vinifera HOM05D000529 ORTHO05D000472 4.8e-07 58.5 119 32.8
Haze_15448 Corylus avellana HOM05D000529 ORTHO05D000472 6.2e-07 58.2 117 33.3
QL06p043096 Quercus lobata HOM05D000529 ORTHO05D000472 6.2e-07 58.2 99 35.4
QL06p043133 Quercus lobata HOM05D000529 ORTHO05D000472 6.2e-07 58.2 99 35.4
Potri.009G091700 Populus trichocarpa HOM05D000529 ORTHO05D038917 8.1e-07 57.8 78 39.7
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 8.1e-07 57.8 117 32.5
RcHm_v2.0_Chr1g0326431 Rosa chinensis HOM05D000529 ORTHO05D000472 1.1e-06 57.4 130 28.5
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 1.1e-06 57.4 126 30.2
FAN08G1780 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.4e-06 57.0 121 31.4
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.4e-06 57.0 117 29.1
Lsat_1_v5_gn_9_123541 Lactuca sativa HOM05D000529 ORTHO05D000472 1.4e-06 57.0 140 28.6
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 1.4e-06 57.0 116 30.2
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.8e-06 56.6 116 31.0
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 1.8e-06 56.6 117 29.1
Lsat_1_v5_gn_4_168440 Lactuca sativa HOM05D000529 ORTHO05D000472 1.8e-06 56.6 118 29.7
Psat4g088680 Pisum sativum HOM05D000529 ORTHO05D000472 1.8e-06 56.6 107 34.6
QL01p034905 Quercus lobata HOM05D000529 ORTHO05D000472 1.8e-06 56.6 121 29.8
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 2.4e-06 56.2 116 31.9
ECA238G2361 Erigeron canadensis HOM05D000529 ORTHO05D000472 2.4e-06 56.2 129 28.7
Lsat_1_v5_gn_9_99361 Lactuca sativa HOM05D000529 ORTHO05D000472 2.4e-06 56.2 134 26.9
Lj7C47G10 Lonicera japonica HOM05D000529 ORTHO05D000472 2.4e-06 56.2 96 30.2
Lj7C47T24 Lonicera japonica HOM05D000529 ORTHO05D000472 2.4e-06 56.2 96 30.2
GSVIVG01007146001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.4e-06 56.2 119 31.9
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 3.1e-06 55.8 114 28.9
arahy.Tifrunner.gnm1.ann1.BJ32EB Arachis hypogaea HOM05D000529 ORTHO05D000472 3.1e-06 55.8 117 29.1
arahy.Tifrunner.gnm1.ann1.FT124Y Arachis hypogaea HOM05D000529 ORTHO05D000472 3.1e-06 55.8 117 28.2
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 3.1e-06 55.8 114 28.9
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 3.1e-06 55.8 117 33.3
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 3.1e-06 55.8 96 35.4
CiPaw.01G024200 Carya illinoinensis HOM05D000529 ORTHO05D000472 4.0e-06 55.5 99 34.3
FvH4_5g32830 Fragaria vesca HOM05D000529 ORTHO05D010311 4.0e-06 55.5 129 28.7
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 4.0e-06 55.5 135 27.4
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 4.0e-06 55.5 135 27.4
FAN18G1950 Fragaria x ananassa HOM05D000529 ORTHO05D010311 4.0e-06 55.5 129 28.7
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 4.0e-06 55.5 125 29.6
Lsat_1_v5_gn_4_168480 Lactuca sativa HOM05D000529 ORTHO05D000472 4.0e-06 55.5 127 27.6
QL03p072768 Quercus lobata HOM05D000529 ORTHO05D000472 4.0e-06 55.5 96 35.4
vmacro17918 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 4.0e-06 55.5 122 28.7
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 5.3e-06 55.1 135 27.4
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 5.3e-06 55.1 103 33.0
HanXRQChr07g0191781 Helianthus annuus HOM05D000529 ORTHO05D000472 5.3e-06 55.1 111 34.2
Lj7C53G2 Lonicera japonica HOM05D000529 ORTHO05D000472 5.3e-06 55.1 129 26.4
MD15G1277700 Malus domestica HOM05D000529 ORTHO05D000472 5.3e-06 55.1 131 32.8
Manes.13G128600 Manihot esculenta HOM05D000529 ORTHO05D000472 5.3e-06 55.1 113 31.9
QL03p072647 Quercus lobata HOM05D000529 ORTHO05D000472 5.3e-06 55.1 96 35.4
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 6.9e-06 54.7 116 31.0
FvH4_1g15430 Fragaria vesca HOM05D000046 ORTHO05D020635 6.9e-06 54.7 110 30.9
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.9e-06 54.7 111 28.8
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 6.9e-06 54.7 126 30.2
Prupe.7G139200 Prunus persica HOM05D000529 ORTHO05D000472 6.9e-06 54.7 117 29.9
Rhsim08G0202200 Rhododendron simsii HOM05D001266 ORTHO05D010311 6.9e-06 54.7 98 34.7
ATR0767G137 Amborella trichopoda HOM05D000529 ORTHO05D000472 9.0e-06 54.3 116 33.6
DCAR_021436 Daucus carota HOM05D000529 ORTHO05D010311 9.0e-06 54.3 132 28.8
FAN26G2562 Fragaria x ananassa HOM05D000046 ORTHO05D207025 9.0e-06 54.3 110 30.9
MD02G1165500 Malus domestica HOM05D000529 ORTHO05D000472 9.0e-06 54.3 94 40.4
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 9.0e-06 54.3 104 32.7
RcHm_v2.0_Chr7g0230651 Rosa chinensis HOM05D000529 ORTHO05D010311 9.0e-06 54.3 132 29.5
Sabra07G0035200 Salix brachista HOM05D000529 ORTHO05D000472 9.0e-06 54.3 104 36.5


User provided reference genes

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